Evidence map›Paper›PMID 39048957›Full record

ArticleBMC plant biology2024

PPGV: a comprehensive database of peach population genome variation.

Yanlin An, Qiuyan Ban, Li Liu, Feng Zhang, Shirui Yu, Tingting Jing, Shiqi Zhao

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yanlin An *Department of Food Science and Engineering, Moutai Institute, Renhuai, China.
Qiuyan Ban *College of Horticulture, Henan Agricultural University, Zhengzhou, China.
Li LiuDepartment of Food Science and Engineering, Moutai Institute, Renhuai, China.
Feng ZhangDepartment of Food Science and Engineering, Moutai Institute, Renhuai, China.
Shirui YuDepartment of Food Science and Engineering, Moutai Institute, Renhuai, China.
Tingting JingState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China. jtt0127@163.com.
Shiqi ZhaoSchool of Fishery, Zhejiang Ocean University, Zhoushan, Zhejiang, 316022, China. zhaosq@zjou.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Peach tree is one of the most important fruit trees in the world, and it has been cultivated for more than 7,500 years. In recent years, the genome and population resequencing of peach trees have been published continuously, which has effectively promoted the research of peach tree genetics and breeding. In order to promote the further mining and utilization of these data, we integrated and constructed a comprehensive peach genome and variation database (PPGV, http://peachtree.work/home ). The PPGV contains 10 sets of published peach tree genome data, as well as genomic variation information for 1,378 peach tree samples (the resequencing data of 1,378 samples were aligned with the high-quality genomes of Lovell, CN14 and Chinesecling, respectively, for mutation detection). A variety of useful and flexible tools, such as BLAST, Gene ID Convert, KEGG/GO Enrichment, Primer Design and Gene function, were also specially designed for searching data and assisting in breeding.

Indexed as

Databases, GeneticGenetic VariationGenome, PlantPrunus persicaDatabaseGenomePeach treeTools moduleVariation

Identifiers

PMID39048957
PMCPMC11267775

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.