Evidence map›Paper›PMID 39048803›Full record

ArticleNature structural & molecular biology2024

Genome dilution by cell growth drives starvation-like proteome remodeling in mammalian and yeast cells.

Michael C Lanz, Shuyuan Zhang, Matthew P Swaffer, Inbal Ziv, Luisa Hernández Götz, Jacob Kim, Frank McCarthy, Daniel F Jarosz, Joshua E Elias, Jan M Skotheim

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Cell size modulates ferroptosis susceptibility.bioRxiv : the preprint server for biology · 2026
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. A Fkh1/2 binding site array in thebioRxiv : the preprint server for biology · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Journal of bacteriology · 2025
    Article
  17. Article
  18. How the chromatin landscape influences nuclear morphology.Frontiers in cell and developmental biology · 2025
    Review
  19. Article
  20. bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Michael C LanzDepartment of Biology, Stanford University, Stanford, CA, USA. mikelanz@stanford.edu.ORCID http://orcid.org/0000-0001-8175-7627
Shuyuan ZhangDepartment of Biology, Stanford University, Stanford, CA, USA.
Matthew P SwafferDepartment of Biology, Stanford University, Stanford, CA, USA.
Inbal ZivDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.
Luisa Hernández GötzDepartment of Biology, Stanford University, Stanford, CA, USA.
Jacob KimDepartment of Biology, Stanford University, Stanford, CA, USA.
Frank McCarthyChan Zuckerberg Biohub San Francisco, Stanford University, Stanford, CA, USA.
Daniel F JaroszDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-3497-5888
Joshua E EliasChan Zuckerberg Biohub San Francisco, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-8063-3259
Jan M SkotheimDepartment of Biology, Stanford University, Stanford, CA, USA. skotheim@stanford.edu.ORCID http://orcid.org/0000-0001-8420-6820

Funding

Determining how cell growth triggers cell divisionR35GM134858 · NIGMS · STANFORD UNIVERSITY · PI Jan M Skotheim · 2020 to 2026
$4.1M
Mechanisms of Action of Natural Genetic VariationR01HG012366 · NHGRI · STANFORD UNIVERSITY · PI Daniel Jarosz · 2023 to 2026
$1.5M
Determining the mechanisms linking cell growth to the cell cycle in the liverR01DK128578 · NIDDK · STANFORD UNIVERSITY · PI SKOTHEIM, JAN M · 2021 to 2024
$1.4M
NHGRI NIH HHS R01 HG012366NIDDK NIH HHS R01 DK128578NIGMS NIH HHS R35 GM134858
6 · The paper itself

Abstract

Cell size is tightly controlled in healthy tissues and single-celled organisms, but it remains unclear how cell size influences physiology. Increasing cell size was recently shown to remodel the proteomes of cultured human cells, demonstrating that large and small cells of the same type can be compositionally different. In the present study, we utilize the natural heterogeneity of hepatocyte ploidy and yeast genetics to establish that the ploidy-to-cell size ratio is a highly conserved determinant of proteome composition. In both mammalian and yeast cells, genome dilution by cell growth elicits a starvation-like phenotype, suggesting that growth in large cells is restricted by genome concentration in a manner that mimics a limiting nutrient. Moreover, genome dilution explains some proteomic changes ascribed to yeast aging. Overall, our data indicate that genome concentration drives changes in cell composition independently of external environmental cues.

Indexed as

ProteomeSaccharomyces cerevisiaeAnimalsCell ProliferationCell SizeHepatocytesHumansPloidiesProteome

Identifiers

PMID39048803
PMCPMC13015536

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.