Evidence map›Paper›PMID 39047060›Full record

ArticleG3 (Bethesda, Md.)2024

Pseudomolecule-scale genome assemblies of Drepanocaryum sewerzowii and Marmoritis complanata.

Samuel J Smit, Caragh Whitehead, Sally R James, Daniel C Jeffares, Grant Godden, Deli Peng, Hang Sun, Benjamin R Lichman

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in G3 (Bethesda, Md.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Samuel J SmitCentre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, UK.ORCID 0000-0002-7382-5113
Caragh WhiteheadCentre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, UK.
Sally R JamesBioscience Technology Facility, Department of Biology, University of York, York YO10 5DD, UK.
Daniel C JeffaresYork Biomedical Research Institute, Department of Biology, University of York, York YO10 5DD, UK.ORCID 0000-0001-7320-0706
Grant GoddenFlorida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0003-2628-4729
Deli PengSchool of Life Science, Yunnan Normal University, Kunming 650092, Yunnan, China.
Hang SunKey Laboratory for Plant Diversity and Biogeography of East Asia/Yunnan Key Laboratory for Integrative Conservation of Plant Species with Extremely Small Populations, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China.ORCID 0000-0001-5127-4579
Benjamin R LichmanCentre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, UK.

Funding

BBSRC BB/V006452/1UKRI MR/S01862X/1
6 · The paper itself

Abstract

The Nepetoideae, a subfamily of Lamiaceae (mint family), is rich in aromatic plants, many of which are sought after for their use as flavors and fragrances or for their medicinal properties. Here, we present genome assemblies for two species in Nepetiodeae: Drepanocaruym sewerzowii and Marmoritis complanata. Both assemblies were generated using Oxford Nanopore Q20 + reads with contigs anchored to nine pseudomolecules that resulted in 335 Mb and 305 Mb assemblies, respectively, and BUSCO scores above 95% for both the assembly and annotation. We furthermore provide a species tree for the Lamiaceae using only genome-derived gene models, complementing existing transcriptome and marker-based phylogenies.

Indexed as

Genome, PlantMolecular Sequence AnnotationPhylogenyGenomicsLamiaceaechromosome-level assemblyHi-C sequencingLamiaceaenanopore sequencingNepetinae

Identifiers

PMID39047060
PMCPMC11979756

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.