Evidence map›Paper›PMID 39046619›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2025

Assessment of Non-canonical Functions of the Autophagy Proteins in LC3-Associated Phagocytosis and LC3-Associated Endocytosis.

Luigi Mari, Emilio Boada-Romero, Zhenrui Li, Joelle Magné, Douglas R Green

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Article in Methods in molecular biology (Clifton, N.J.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Luigi MariDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA. luigi.mari@stjude.org.
Emilio Boada-RomeroDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Zhenrui LiDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Joelle MagnéDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Douglas R GreenDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA. douglas.green@stjude.org.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identification and characterization of noncanonical functions within the autophagy pathway have unveiled intricate cellular processes, including LC3-associated phagocytosis (LAP) and LC3-associated endocytosis (LANDO). These phenomena play pivotal roles in the conjugation of ATG8 with single-membrane phagosomes and endosomes, shedding light on the dynamic interplay between autophagy and cellular homeostasis. Here, we present detailed protocols for both qualitative and quantitative assessment of LAP, including immunofluorescence, flow cytometry, and Western blotting of isolated LAPosomes. Additionally, the protocol for the evaluation of LANDO through immunofluorescent detection of receptor recycling is outlined. The methodologies presented herein serve as a practical guide for researchers seeking to unravel the intricacies of LAP and LANDO. By providing step-by-step instructions, accompanied by insights into potential challenges and optimization strategies, this chapter aims to empower investigators in the exploration of these noncanonical functions of autophagy proteins.

Indexed as

AutophagyAutophagy-Related ProteinsEndocytosisMicrotubule-Associated ProteinsPhagocytosisAnimalsAutophagy-Related Protein 8 FamilyFlow CytometryFluorescent Antibody TechniqueHumansPhagosomesAutophagy-Related Protein 8 FamilyAutophagy-Related ProteinsMAP1LC3A protein, humanMicrotubule-Associated ProteinsATG8AutophagyFlow cytometryImmunofluorescenceLANDOLAPLC3-associated endocytosisLC3-associated phagocytosisPhagosomeReceptor recyclingWestern blotting

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.