Evidence map›Paper›PMID 39046429›Full record

ArticleJournal of cellular and molecular medicine2024

Novel candidate metastasis-associated genes for synovial sarcoma.

Zhiqing Zhao, Jianfang Niu, Jichuan Wang, Ranxin Zhang, Haijie Liang, Yingteng Ma, Alexander Ferrena, Wei Wang, Rui Yang, David S Geller and 5 more

Abstract read
In one paragraph

Article in Journal of cellular and molecular medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Novel candidate metastasis-associated genes for synovial sarcoma.Journal of cellular and molecular medicine · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Zhiqing ZhaoDepartment of Orthopedics, Peking University First Hospital, Beijing, China.
Jianfang NiuDepartment of Orthopedics, Peking University First Hospital, Beijing, China.
Jichuan WangMusculoskeletal Tumor Center, Peking University People's Hospital, Beijing, China.
Ranxin ZhangDepartment of Orthopedic Surgery, Montefiore Medical Center, Albert Einstein College of Medicine, Bronx, New York, USA.
Haijie LiangMusculoskeletal Tumor Center, Peking University People's Hospital, Beijing, China.
Yingteng MaDepartment of Pathology, Peking University People's Hospital, Beijing, China.
Alexander FerrenaDepartment of Orthopedic Surgery, Montefiore Medical Center, Albert Einstein College of Medicine, Bronx, New York, USA.
Wei WangMusculoskeletal Tumor Center, Peking University People's Hospital, Beijing, China.
Rui YangDepartment of Orthopedic Surgery, Montefiore Medical Center, Albert Einstein College of Medicine, Bronx, New York, USA.
David S GellerDepartment of Orthopedic Surgery, Montefiore Medical Center, Albert Einstein College of Medicine, Bronx, New York, USA.
Wei GuoMusculoskeletal Tumor Center, Peking University People's Hospital, Beijing, China.
Tingting RenMusculoskeletal Tumor Center, Peking University People's Hospital, Beijing, China.
Bang H HoangDepartment of Orthopedic Surgery, Montefiore Medical Center, Albert Einstein College of Medicine, Bronx, New York, USA.
Xiaodong TangMusculoskeletal Tumor Center, Peking University People's Hospital, Beijing, China.
Taiqiang YanDepartment of Orthopedics, Peking University First Hospital, Beijing, China.ORCID 0000-0003-3982-1052

Funding

Leveraging Tumor Suppressor Inactivation for Osteosarcoma TherapyR01CA255643 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI HOANG, BANG H · 2021 to 2024
$1.7M
Beijing Physician Scientist Training Project BJPSTP-2024-10National Institutes of Health, U.S. Department of Health and Human Services R01CA255643National Natural Science Foundation of China 82103223National Natural Science Foundation of China 82141120NCI NIH HHS R01 CA255643Peking University Clinical Scientist Training Program BMU2023PYJH015Peking University People's Hospital Scientific Research Development Funds RDJP2023-24Peking University People's Hospital Scientific Research Development Funds RDX2022-01
6 · The paper itself

Abstract

Synovial sarcoma (SS) is an aggressive soft tissue sarcoma with poor prognosis due to late recurrence and metastasis. Metastasis is an important prognostic factor of SS. This study aimed to identify the core genes and mechanisms associated with SS metastasis. Microarray data for GSE40021 and GSE40018 were obtained from the Gene Expression Omnibus database. 186 differentially expressed genes (DEGs) were identified. The biological functions and signalling pathways closely associated with SS metastasis included extracellular matrix (ECM) organization and ECM-receptor interaction. Gene set enrichment analysis showed that the terms cell cycle, DNA replication, homologous recombination and mismatch repair were significantly enriched in the metastasis group. Weighted gene co-expression network analysis identified the most relevant module and 133 hub genes, and 31 crossover genes were identified by combining DEGs. Subsequently, four characteristic genes, EXO1, NCAPG, POLQ and UHRF1, were identified as potential biomarkers associated with SS metastasis using the least absolute shrinkage and selection operator algorithm and validation dataset verification analysis. Immunohistochemistry results from our cohort of 49 patients revealed visible differences in the expression of characteristic genes between the non-metastatic and metastatic groups. Survival analysis indicated that high expression of characteristic genes predicted poor prognosis. Our data revealed that primary SS samples from patients who developed metastasis showed activated homologous recombination and mismatch repair compared to samples from patients without metastasis. Furthermore, EXO1, NCAPG, POLQ and UHRF1 were identified as potential candidate metastasis-associated genes. This study provides further research insights and helps explore the mechanisms of SS metastasis.

Indexed as

Biomarkers, TumorGene Expression ProfilingGene Expression Regulation, NeoplasticNeoplasm MetastasisSarcoma, SynovialComputational BiologyDatabases, GeneticFemaleGene Regulatory NetworksHumansMaleMiddle AgedPrognosisBiomarkers, TumorEXO1metastasisNCAPGPOLQsynovial sarcomaUHRF1

Identifiers

PMID39046429
PMCPMC11267982

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.