Evidence map›Paper›PMID 39046282›Full record

ArticleThe ISME journal2024

Scarcity of fixed carbon transfer in a model microbial phototroph-heterotroph interaction.

Sunnyjoy Dupuis, Usha F Lingappa, Xavier Mayali, Eve S Sindermann, Jordan L Chastain, Peter K Weber, Rhona Stuart, Sabeeha S Merchant

Abstract read
In one paragraph

Article in The ISME journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Sunnyjoy DupuisDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720, United States.
Usha F LingappaCalifornia Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, United States.
Xavier MayaliPhysical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA 94550, United States.
Eve S SindermannCalifornia Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, United States.
Jordan L ChastainCalifornia Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, United States.
Peter K WeberPhysical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA 94550, United States.
Rhona StuartPhysical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA 94550, United States.
Sabeeha S MerchantDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720, United States.

Funding

Genetic Dissection of Cells and Organisms Training ProgramT32GM132022 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Nicole King, NOAH K WHITEMAN · 2019 to 2026
$5.2M
Gordon and Betty Moore Foundation Symbiosis in Aquatic Systems Initiative Investigator Award GBML9203Lawrence Livermore National Laboratory μBiospheres Scientific Focus Area SCW1039NIGMS NIH HHS T32 GM132022US Department of Energy Office of Biological and Environmental Research Genomic Sciences ProgramUS National Institute of Health T32 Genetic Dissection of Cells and Organisms 1T32GM132022-01
6 · The paper itself

Abstract

Although the green alga Chlamydomonas reinhardtii has long served as a reference organism, few studies have interrogated its role as a primary producer in microbial interactions. Here, we quantitatively investigated C. reinhardtii's capacity to support a heterotrophic microbe using the established coculture system with Mesorhizobium japonicum, a vitamin B12-producing α-proteobacterium. Using stable isotope probing and nanoscale secondary ion mass spectrometry (nanoSIMS), we tracked the flow of photosynthetic fixed carbon and consequent bacterial biomass synthesis under continuous and diurnal light with single-cell resolution. We found that more 13C fixed by the alga was taken up by bacterial cells under continuous light, invalidating the hypothesis that the alga's fermentative degradation of starch reserves during the night would boost M. japonicum heterotrophy. 15NH4 assimilation rates and changes in cell size revealed that M. japonicum cells reduced new biomass synthesis in coculture with the alga but continued to divide-a hallmark of nutrient limitation often referred to as reductive division. Despite this sign of starvation, the bacterium still synthesized vitamin B12 and supported the growth of a B12-dependent C. reinhardtii mutant. Finally, we showed that bacterial proliferation could be supported solely by the algal lysis that occurred in coculture, highlighting the role of necromass in carbon cycling. Collectively, these results reveal the scarcity of fixed carbon in this microbial trophic relationship (particularly under environmentally relevant light regimes), demonstrate B12 exchange even during bacterial starvation, and underscore the importance of quantitative approaches for assessing metabolic coupling in algal-bacterial interactions.

Indexed as

CarbonChlamydomonas reinhardtiiHeterotrophic ProcessesMesorhizobiumMicrobial InteractionsPhotosynthesisVitamin B 12BiomassCarbon IsotopesCoculture TechniquesPhototrophic ProcessesCarbonCarbon IsotopesVitamin B 12chlorophytecobalamincocultivationdielphotoautotrophrhizobiaSIPsymbiosis

Identifiers

PMID39046282
PMCPMC11316394

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.