Evidence map›Paper›PMID 39044269›Full record

ArticleJournal of cellular and molecular medicine2024

Summary data-based Mendelian randomization and single-cell RNA sequencing analyses identify immune associations with low-level LGALS9 in sepsis.

Yongsan Yang, Lei Dong, Yanguo Li, Ye Huang, Xiaoxi Zeng

Abstract read
In one paragraph

Article in Journal of cellular and molecular medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. The Causal Effects of Inflammation and Coagulation-Related Biomarkers on Sepsis-Related Complications: A Mendelian Randomization Study.Clinical and applied thrombosis/hemostasis : official journal of the International Academy of Clinical and Applied Thrombosis/Hemostasis
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yongsan YangIntensive Care Unit and West China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu, China.
Lei DongKey Laboratory of RNA Biology, Center for Big Data Research in Health, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Yanguo LiInstitute of Drug Discovery Technology, Ningbo University, Ningbo, China.
Ye HuangDepartment of Emergency Medicine, Xiyuan Hospital of China Academy of Chinese Medical Sciences, Beijing, China.
Xiaoxi ZengMed-X Center for Informatics, Sichuan University, Chengdu, China.ORCID 0000-0001-9946-4291

Funding

Chengdu Municipal Science and Technology Program 2022-YF05-01538-SNNational Key Research and Development Program of China 2022YFC2504500Sichuan Province Science and Technology Support Program 2023NSFSC1598
6 · The paper itself

Abstract

Sepsis is one of the major challenges in intensive care units, characterized by the complexity of the host immune status. To gain a deeper understanding of the pathogenesis of sepsis, it is crucial to study the phenotypic changes in immune cells and their underlying molecular mechanisms. We conducted Summary data-based Mendelian randomization analysis by integrating genome-wide association studies data for sepsis with expression quantitative trait locus data, revealing a significant decrease in the expression levels of 17 biomarkers in sepsis patients. Furthermore, based on single-cell RNA sequencing data, we elucidated potential molecular mechanisms at single-cell resolution and identified that LGALS9 inhibition in sepsis patients leads to the activation and differentiation of monocyte and T-cell subtypes. These findings are expected to assist researchers in gaining a more in-depth understanding of the immune dysregulation in sepsis.

Indexed as

GalectinsGenome-Wide Association StudyMendelian Randomization AnalysisQuantitative Trait LociSepsisSequence Analysis, RNASingle-Cell AnalysisBiomarkersGenetic Predisposition to DiseaseHumansMonocytesPolymorphism, Single NucleotideBiomarkersGalectinsLGALS9 protein, humanLGALS9monocytessingle‐cell RNA‐seqSummary data‐based Mendelian randomizationT cells

Identifiers

PMID39044269
PMCPMC11265992

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.