Evidence map›Paper›PMID 39043959›Full record

ArticleNature chemical biology2025

Unlocking saponin biosynthesis in soapwort.

Seohyun Jo, Amr El-Demerdash, Charlotte Owen, Vikas Srivastava, Dewei Wu, Shingo Kikuchi, James Reed, Hannah Hodgson, Alex Harkess, Shengqiang Shu and 11 more

Abstract read
In one paragraph

Article in Nature chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Seohyun JoDepartment of Biochemistry and Metabolism, John Innes Centre, Norwich Research Park, Norwich, UK.ORCID 0000-0001-5742-2376
Amr El-DemerdashDepartment of Biochemistry and Metabolism, John Innes Centre, Norwich Research Park, Norwich, UK.ORCID 0000-0001-6459-2955
Charlotte OwenDepartment of Biochemistry and Metabolism, John Innes Centre, Norwich Research Park, Norwich, UK.ORCID 0000-0001-9023-2179
Vikas SrivastavaDepartment of Biochemistry and Metabolism, John Innes Centre, Norwich Research Park, Norwich, UK.ORCID 0000-0003-4168-3197
Dewei WuDepartment of Biochemistry and Metabolism, John Innes Centre, Norwich Research Park, Norwich, UK.
Shingo KikuchiDepartment of Biochemistry and Metabolism, John Innes Centre, Norwich Research Park, Norwich, UK.ORCID 0000-0001-9033-6242
James ReedDepartment of Biochemistry and Metabolism, John Innes Centre, Norwich Research Park, Norwich, UK.ORCID 0000-0001-5780-6134
Hannah HodgsonDepartment of Biochemistry and Metabolism, John Innes Centre, Norwich Research Park, Norwich, UK.ORCID 0000-0002-9499-7037
Alex HarkessHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Shengqiang ShuUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Chris PlottHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.ORCID 0000-0002-0109-5174
Jerry JenkinsHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.ORCID 0000-0002-7943-3997
Melissa WilliamsHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Lori-Beth BostonHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Elia LacchiniDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Tongtong QuDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Alain GoossensDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Jane GrimwoodHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.ORCID 0000-0002-8356-8325
Jeremy SchmutzHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Jim Leebens-MackDepartment of Plant Biology, Miller Plant Sciences, University of Georgia, Athens, GA, USA.ORCID 0000-0003-4811-2231
Anne OsbournDepartment of Biochemistry and Metabolism, John Innes Centre, Norwich Research Park, Norwich, UK. anne.osbourn@jic.ac.uk.ORCID 0000-0003-2195-5810

Funding

Synthetic biology tools for scalable production of medicinal plant terpenesR01AT010593 · NCCIH · STANFORD UNIVERSITY · PI KEASLING, JAY D, LANGE, BERND MARKUS · 2019 to 2023
$3.5M
DOE | Advanced Research Projects Agency - Energy (Advanced Research Projects Agency - Energy - U.S. Department of Energy) DE-AC02-05CH11231Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) AT010593-01John Innes Foundation (JIF)NCCIH NIH HHS R01 AT010593RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/T015063/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/V015176/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/W017857/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/X01097X/1Royal Society NIF\R1\211270
6 · The paper itself

Abstract

Soapwort (Saponaria officinalis) is a flowering plant from the Caryophyllaceae family with a long history of human use as a traditional source of soap. Its detergent properties are because of the production of polar compounds (saponins), of which the oleanane-based triterpenoid saponins, saponariosides A and B, are the major components. Soapwort saponins have anticancer properties and are also of interest as endosomal escape enhancers for targeted tumor therapies. Intriguingly, these saponins share common structural features with the vaccine adjuvant QS-21 and, thus, represent a potential alternative supply of saponin adjuvant precursors. Here, we sequence the S. officinalis genome and, through genome mining and combinatorial expression, identify 14 enzymes that complete the biosynthetic pathway to saponarioside B. These enzymes include a noncanonical cytosolic GH1 (glycoside hydrolase family 1) transglycosidase required for the addition of D-quinovose. Our results open avenues for accessing and engineering natural and new-to-nature pharmaceuticals, drug delivery agents and potential immunostimulants.

Indexed as

SaponariaSaponinsBiosynthetic PathwaysHumansSaponins

Identifiers

PMID39043959
PMCPMC11782082

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.