Evidence map›Paper›PMID 39043711›Full record

ArticleScientific reports2024

Evolution of ion channels in cetaceans: a natural experiment in the tree of life.

Cristóbal Uribe, Mariana F Nery, Kattina Zavala, Gonzalo A Mardones, Gonzalo Riadi, Juan C Opazo

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Cristóbal UribeDepartment of Bioinformatics, Program in Sciences Mention Modeling of Chemical and Biological Systems, School of Bioinformatics Engineering, Center for Bioinformatics, Simulation and Modeling, CBSM, Faculty of Engineering, University of Talca, Campus Talca, Talca, Chile.
Mariana F NeryDepartamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas-UNICAMP, Cidade Universitária, Campinas, Brazil.
Kattina ZavalaFacultad de Medicina y Ciencia, Universidad San Sebastián, Valdivia, Chile.
Gonzalo A MardonesFacultad de Medicina y Ciencia, Universidad San Sebastián, Valdivia, Chile.
Gonzalo RiadiDepartment of Bioinformatics, Center for Bioinformatics, Simulation and Modeling, Faculty of Engineering, CBSM, University of Talca, Talca, Chile. griadi@utalca.cl.
Juan C OpazoFacultad de Medicina y Ciencia, Universidad San Sebastián, Valdivia, Chile. juan.opazo@uss.cl.

Funding

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior Code 001FONDEQUIP EQM160063Fondo Nacional de Desarrollo Científico y Tecnológico 1210471Fondo Nacional de Desarrollo Científico y Tecnológico 1211481Fondo Nacional de Desarrollo Científico y Tecnológico 1231357Fundação Amazônia Paraense de Amparo à Pesquisa 2015/18269-1Millennium Scientific Initiative NCN19_168
6 · The paper itself

Abstract

Cetaceans represent a natural experiment within the tree of life in which a lineage changed from terrestrial to aquatic habitats. This shift involved phenotypic modifications, representing an opportunity to explore the genetic bases of phenotypic diversity. Among the different molecular systems that maintain cellular homeostasis, ion channels are crucial for the proper physiological functioning of all living species. This study aims to explore the evolution of ion channels during the evolutionary history of cetaceans. To do so, we created a bioinformatic pipeline to annotate the repertoire of ion channels in the genome of the species included in our sampling. Our main results show that cetaceans have, on average, fewer protein-coding genes and a higher percentage of annotated ion channels than non-cetacean mammals. Signals of positive selection were detected in ion channels related to the heart, locomotion, visual and neurological phenotypes. Interestingly, we predict that the NaV1.5 ion channel of most toothed whales (odontocetes) is sensitive to tetrodotoxin, similar to NaV1.7, given the presence of tyrosine instead of cysteine, in a specific position of the ion channel. Finally, the gene turnover rate of the cetacean crown group is more than three times faster than that of non-cetacean mammals.

Indexed as

CetaceaEvolution, MolecularIon ChannelsAnimalsComputational BiologyGenomePhylogenyIon ChannelsGene turnoverNaV1.5PKD1L1SCN5ATetrodotoxinTTX

Identifiers

PMID39043711
PMCPMC11266680

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.