Evidence map›Paper›PMID 39043658›Full record

ArticleNature communications2024

Elf1 promotes transcription-coupled repair in yeast by using its C-terminal domain to bind TFIIH.

Kathiresan Selvam, Jun Xu, Hannah E Wilson, Juntaek Oh, Qingrong Li, Dong Wang, John J Wyrick

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kathiresan Selvam *School of Molecular Biosciences, Washington State University, Pullman, WA, USA.ORCID 0000-0001-7433-2268
Jun Xu *Division of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.ORCID 0009-0001-1360-2778
Hannah E WilsonSchool of Molecular Biosciences, Washington State University, Pullman, WA, USA.
Juntaek OhDivision of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0002-7625-2779
Qingrong LiDivision of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0002-8583-3620
Dong WangDivision of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA. dongwang@ucsd.edu.ORCID 0000-0002-2829-1546
John J WyrickSchool of Molecular Biosciences, Washington State University, Pullman, WA, USA. jwyrick@wsu.edu.ORCID 0000-0002-7911-3803

Funding

Genome-wide analysis of the formation and mutagenesis of atypical UV photoproducts in skin cancerR01ES032814 · NIEHS · WASHINGTON STATE UNIVERSITY · PI STEVEN A ROBERTS, John J Wyrick · 2021 to 2026
$5.8M
Molecular Mechanisms for DNA Damage Processing by Transcription MachineryR01GM102362 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WANG, DONG · 2013 to 2025
$5.6M
Regulation of DNA Excision Repair in ChromatinR01ES028698 · NIEHS · WASHINGTON STATE UNIVERSITY · PI John J Wyrick · 2018 to 2026
$2.7M
Identifying recurrent driver mutations in skin cancers by targeted UV damage sequencingR21ES035139 · NIEHS · WASHINGTON STATE UNIVERSITY · PI WYRICK, JOHN J · 2023 to 2024
$449k
NIEHS NIH HHS R01 ES028698NIEHS NIH HHS R01 ES032814NIEHS NIH HHS R21 ES035139NIGMS NIH HHS R01 GM102362U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) R01ES028698U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) R01ES032814U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) R21ES035139U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM102362
6 · The paper itself

Abstract

Transcription coupled-nucleotide excision repair (TC-NER) removes DNA lesions that block RNA polymerase II (Pol II) transcription. A key step in TC-NER is the recruitment of the TFIIH complex, which initiates DNA unwinding and damage verification; however, the mechanism by which TFIIH is recruited during TC-NER, particularly in yeast, remains unclear. Here, we show that the C-terminal domain (CTD) of elongation factor-1 (Elf1) plays a critical role in TC-NER in yeast by binding TFIIH. Analysis of genome-wide repair of UV-induced cyclobutane pyrimidine dimers (CPDs) using CPD-seq indicates that the Elf1 CTD in yeast is required for efficient TC-NER. We show that the Elf1 CTD binds to the pleckstrin homology (PH) domain of the p62 subunit of TFIIH in vitro, and identify a putative TFIIH-interaction region (TIR) in the Elf1 CTD that is important for PH binding and TC-NER. The Elf1 TIR shows functional, structural, and sequence similarities to a conserved TIR in the mammalian UV sensitivity syndrome A (UVSSA) protein, which recruits TFIIH during TC-NER in mammalian cells. These findings suggest that the Elf1 CTD acts as a functional counterpart to mammalian UVSSA in TC-NER by recruiting TFIIH in response to Pol II stalling at DNA lesions.

Indexed as

DNA RepairSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factor TFIIHDNA DamageExcision RepairProtein BindingProtein DomainsPyrimidine DimersRNA Polymerase IITranscription, GeneticUltraviolet RaysPyrimidine DimersRNA Polymerase IISaccharomyces cerevisiae ProteinsTranscription Factor TFIIH

Identifiers

PMID39043658
PMCPMC11266705

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.