Evidence map›Paper›PMID 39042225›Full record

ArticleAntonie van Leeuwenhoek2024

Phylogenomic analyses and comparative genomic studies of Thermus strains isolated from Tengchong and Tibet Hot Springs, China.

Inam Ullah Khan, Muhammad Saqib, Arshia Amin, Sadia Manzoor, Iftikhar Ahmed, Rui-Rui Liu, Jian-Yu Jiao, Xiao-Yang Zhi, Wen-Jun Li

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Antonie van Leeuwenhoek, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Autotrophic growth ofFrontiers in microbiology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Inam Ullah KhanFaculty of Veterinary and Animal Sciences, Institute of Microbiology, Gomal University, Dera Ismail Khan, Khyber Pakhtunkhwa, 29050, Pakistan.
Muhammad SaqibDepartment of Zoology, Gomal University, Tank Campus, 29050, Dera Ismail Khan, Khyber Pakhtunkhwa, Pakistan.
Arshia AminDepartment of Bioinformatics and Biosciences, Capital University of Science and Technology, Islamabad, 45500, Pakistan.
Sadia ManzoorInstitute of Microbial Culture Collection of Pakistan (IMCCP), National Agricultural Research Centre (NARC), Park Road, Islamabad, 45500, Pakistan.
Iftikhar AhmedInstitute of Microbial Culture Collection of Pakistan (IMCCP), National Agricultural Research Centre (NARC), Park Road, Islamabad, 45500, Pakistan.
Rui-Rui LiuState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Stress Biology and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China.
Jian-Yu JiaoState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Stress Biology and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China.
Xiao-Yang ZhiSchool of Life Sciences, Yunnan Institute of Microbiology, Yunnan University, Kunming, 650091, People's Republic of China. xyzhi@ynu.edu.cn.
Wen-Jun LiState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Stress Biology and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China. liwenjun3@mail.sysu.edu.cn.

Funding

Guangdong Provincial Science and Technology Plan Project 2022A0505020001National Natural Science Foundation of China 32200088National Natural Science Foundation of China 92251302National Science and Technology Fundamental Resources Investigation Program of China 2021FY100900
6 · The paper itself

Abstract

Genus Thermus is the main focus of researcher among the thermophiles. Members of this genus are the inhabitants of both natural and artificial thermal environments. We performed phylogenomic analyses and comparative genomic studies to unravel the genomic diversity among the strains belonging to the genus Thermus in geographically different thermal springs. Sixteen Thermus strains were isolated and sequenced from hot springs, Qucai hot springs in Tibet and Tengchong hot springs in Yunnan, China. 16S rRNA gene based phylogeny and phylogenomic analyses based on concatenated set of 971 Orthologous Protein Families (supermatrix and gene content methods) revealed a mixed distribution of the Thermus strains. Whole genome based phylogenetic analysis showed, all 16 Thermus strains belong to five species; Thermus oshimai (YIM QC-2-109, YIM 1640, YIM 1627, 77359, 77923, 77838), Thermus antranikianii (YIM 73052, 77412, 77311, 71206), Thermus brokianus (YIM 73518, 71318, 72351), Thermus hydrothermalis (YIM 730264 and 77927) and one potential novel species 77420 forming clade with Thermus thalpophilus SYSU G00506

Indexed as

Genome, BacterialGenomicsHot SpringsPhylogenyRNA, Ribosomal, 16SThermusChinaDNA, BacterialSequence Analysis, DNATibetDNA, BacterialRNA, Ribosomal, 16SComparative genomicsHot Springs in ChinaPhylogenomic analysesSupermatrix and gene contentThermus sp. 77420T

Identifiers

PMID39042225

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.