Evidence map›Paper›PMID 39039256›Full record

ArticleNature chemical biology2024

Macrolones target bacterial ribosomes and DNA gyrase and can evade resistance mechanisms.

Elena V Aleksandrova, Cong-Xuan Ma, Dorota Klepacki, Faezeh Alizadeh, Nora Vázquez-Laslop, Jian-Hua Liang, Yury S Polikanov, Alexander S Mankin

Abstract read
In one paragraph

Article in Nature chemical biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Evading resistance at the double.Nature chemical biology · 2024
    Article
  15. Primed for Discovery.Biochemistry · 2024
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Elena V Aleksandrova *Department of Biological Sciences, University of Illinois at Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-1808-5319
Cong-Xuan Ma *Key Laboratory of Medicinal Molecule Science and Pharmaceutical Engineering, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, China.
Dorota Klepacki *Center for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, USA.
Faezeh AlizadehCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, USA.
Nora Vázquez-LaslopCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-2256-693X
Jian-Hua LiangKey Laboratory of Medicinal Molecule Science and Pharmaceutical Engineering, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, China. ljhbit@bit.edu.cn.ORCID http://orcid.org/0000-0003-1309-8521
Yury S PolikanovDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, USA. yuryp@uic.edu.ORCID http://orcid.org/0000-0002-5064-0327
Alexander S MankinCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, USA. shura@uic.edu.ORCID http://orcid.org/0000-0002-3301-827X

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Unraveling context specificity of translation by elucidating the mechanism of action of auxiliary translation factorsR35GM127134 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ALEXANDER S MANKIN · 2018 to 2026
$3.2M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Structural basis of Erm-mediated macrolide resistanceR21AI137584 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MANKIN, ALEXANDER S, POLIKANOV, YURY · 2018 to 2019
$440k
National Natural Science Foundation of China (National Science Foundation of China) 81673335NIAID NIH HHS R21 AI137584NIGMS NIH HHS P30 GM124165NIGMS NIH HHS R35 GM127134NIH HHS S10 OD021527U.S. Department of Health & Human Services | National Institutes of Health (NIH) R21-AI137584U.S. Department of Health & Human Services | National Institutes of Health (NIH) R35-GM127134
6 · The paper itself

Abstract

Growing resistance toward ribosome-targeting macrolide antibiotics has limited their clinical utility and urged the search for superior compounds. Macrolones are synthetic macrolide derivatives with a quinolone side chain, structurally similar to DNA topoisomerase-targeting fluoroquinolones. While macrolones show enhanced activity, their modes of action have remained unknown. Here, we present the first structures of ribosome-bound macrolones, showing that the macrolide part occupies the macrolide-binding site in the ribosomal exit tunnel, whereas the quinolone moiety establishes new interactions with the tunnel. Macrolones efficiently inhibit both the ribosome and DNA topoisomerase in vitro. However, in the cell, they target either the ribosome or DNA gyrase or concurrently both of them. In contrast to macrolide or fluoroquinolone antibiotics alone, dual-targeting macrolones are less prone to select resistant bacteria carrying target-site mutations or to activate inducible macrolide resistance genes. Furthermore, because some macrolones engage Erm-modified ribosomes, they retain activity even against strains with constitutive erm resistance genes.

Indexed as

Anti-Bacterial AgentsDNA GyraseDrug Resistance, BacterialMacrolidesRibosomesEscherichia coliMicrobial Sensitivity TestsModels, MolecularTopoisomerase II InhibitorsAnti-Bacterial AgentsDNA GyraseMacrolidesTopoisomerase II Inhibitors

Identifiers

PMID39039256
PMCPMC11686707

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.