Evidence map›Paper›PMID 39037082›Full record

ArticleJournal of chemical information and modeling2024

Novel Inhibitors of SARS-CoV-2 RNA Identified through Virtual Screening.

Gregory Mathez, Andrea Brancale, Valeria Cagno

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Gregory MathezInstitute of Microbiology, University Hospital of Lausanne, University of Lausanne, 1011 Lausanne, Switzerland.ORCID 0000-0002-4453-7649
Andrea BrancaleDepartment of Organic Chemistry, University of Chemistry and Technology Prague, 16628 Prague 6, Czech Republic.ORCID 0000-0002-9728-3419
Valeria CagnoInstitute of Microbiology, University Hospital of Lausanne, University of Lausanne, 1011 Lausanne, Switzerland.ORCID 0000-0002-5597-334X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We currently lack antivirals for most human viruses. In a quest for new molecules, focusing on viral RNA, instead of viral proteins, can represent a promising strategy. In this study, new inhibitors were identified starting from a published crystal structure of the tertiary SARS-CoV-2 RNA involved in the -1 programmed ribosomal frameshift. The pseudoknot structure was refined, and a virtual screening was performed using the repository of binders to the nucleic acid library, taking into consideration RNA flexibility. Hit compounds were validated against the wild-type virus and with a dual-luciferase assay measuring the frameshift efficiency. Several active molecules were identified. Our study reveals new inhibitors of SARS-CoV-2 but also highlights the feasibility of targeting RNA starting from virtual screening, a strategy that could be broadly applied to drug development.

Indexed as

Antiviral AgentsDrug Evaluation, PreclinicalRNA, ViralSARS-CoV-2HumansModels, MolecularMolecular Docking SimulationNucleic Acid ConformationUser-Computer InterfaceAntiviral AgentsRNA, Viral

Identifiers

PMID39037082
PMCPMC11323243

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.