Evidence map›Paper›PMID 39035159›Full record

ArticlePeerJ2024

Bioprospecting of soil-borne microorganisms and chemical dereplication of their anti-microbial constituents with the aid of UPLC-QTOF-MS and molecular networking approach.

Adivhaho Khwathisi, Ntakadzeni Edwin Madala, Afsatou Ndama Traore, Amidou Samie

Abstract read
In one paragraph

Article in PeerJ, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Adivhaho KhwathisiBiochemistry and Microbiology, University of Venda for Science and Technology, Thohoyandou, South Africa.
Ntakadzeni Edwin MadalaBiochemistry and Microbiology, University of Venda for Science and Technology, Thohoyandou, South Africa.
Afsatou Ndama TraoreBiochemistry and Microbiology, University of Venda for Science and Technology, Thohoyandou, South Africa.
Amidou SamieBiochemistry and Microbiology, University of Venda for Science and Technology, Thohoyandou, South Africa.

Funding

National Research Foundation of South Africa
6 · The paper itself

Abstract

Due to the emergence of drug-resistant microorganisms, the search for broad-spectrum antimicrobial compounds has become extremely crucial. Natural sources like plants and soils have been explored for diverse metabolites with antimicrobial properties. This study aimed to identify microorganisms from agricultural soils exhibiting antimicrobial effects against known human pathogens, and to highlight the chemical space of the responsible compounds through the computational metabolomics-based bioprospecting approach. Herein, bacteria were extracted from soil samples and their antimicrobial potential was measured via the agar well diffusion method. Methanolic extracts from the active bacteria were analyzed using the liquid chromatography quadrupole time-of-flight mass spectrometry (LC-QTOF-MS) technique, and the subsequent data was further analyzed through molecular networking approach which aided in identification of potential anti-microbial compounds. Furthermore, 16S rRNA gene sequencing enabled identification of the active bacterial isolates, where isolate 1 and 2 were identified as strains of

Indexed as

BioprospectingSoil MicrobiologyAnti-Bacterial AgentsAnti-Infective AgentsBacillus pumilusBacillus subtilisChromatography, LiquidHumansMass SpectrometryMetabolomicsMicrobial Sensitivity TestsRNA, Ribosomal, 16SAnti-Bacterial AgentsAnti-Infective AgentsRNA, Ribosomal, 16SBacillusDiketopiperazineLC-QTOF-MSMolecular networkingSurfactin

Identifiers

PMID39035159
PMCPMC11260408

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.