Evidence map›Paper›PMID 39034655›Full record

ReviewMolecular plant pathology2024

Histone (de)acetylation in epigenetic regulation of Phytophthora pathobiology.

Yufeng Guan, Joanna Gajewska, Jolanta Floryszak-Wieczorek, Umesh Kumar Tanwar, Ewa Sobieszczuk-Nowicka, Magdalena Arasimowicz-Jelonek

Abstract readReview
In one paragraph

Review in Molecular plant pathology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yufeng GuanDepartment of Plant Ecophysiology, Institute of Experimental Biology, Faculty of Biology, Adam Mickiewicz University in Poznań, Poznań, Poland.ORCID 0000-0002-7120-3193
Joanna GajewskaDepartment of Plant Ecophysiology, Institute of Experimental Biology, Faculty of Biology, Adam Mickiewicz University in Poznań, Poznań, Poland.ORCID 0000-0001-7145-5182
Jolanta Floryszak-WieczorekDepartment of Plant Physiology, Poznań University of Life Sciences, Poznań, Poland.ORCID 0000-0003-2281-223X
Umesh Kumar TanwarDepartment of Plant Physiology, Faculty of Biology, Adam Mickiewicz University in Poznań, Poznań, Poland.ORCID 0000-0003-1032-6816
Ewa Sobieszczuk-NowickaDepartment of Plant Physiology, Faculty of Biology, Adam Mickiewicz University in Poznań, Poznań, Poland.ORCID 0000-0002-6603-0582
Magdalena Arasimowicz-JelonekDepartment of Plant Ecophysiology, Institute of Experimental Biology, Faculty of Biology, Adam Mickiewicz University in Poznań, Poznań, Poland.ORCID 0000-0002-3109-5933

Funding

Narodowe Centrum Nauki 2018/31/B/NZ9/00355
6 · The paper itself

Abstract

Phytophthora species are oomycetes that have evolved a broad spectrum of biological processes and improved strategies to cope with host and environmental challenges. A growing body of evidence indicates that the high pathogen plasticity is based on epigenetic regulation of gene expression linked to Phytophthora's rapid adjustment to endogenous cues and various stresses. As 5mC DNA methylation has not yet been identified in Phytophthora, the reversible processes of acetylation/deacetylation of histone proteins seem to play a pivotal role in the epigenetic control of gene expression in oomycetes. To explore this issue, we review the structure, diversity, and phylogeny of histone acetyltransferases (HATs) and histone deacetylases (HDACs) in six plant-damaging Phytophthora species: P. capsici, P. cinnamomi, P. infestans, P. parasitica, P. ramorum, and P. sojae. To further integrate and improve our understanding of the phylogenetic classification, evolutionary relationship, and functional characteristics, we supplement this review with a comprehensive view of HATs and HDACs using recent genome- and proteome-level databases. Finally, the potential functional role of transcriptional reprogramming mediated by epigenetic changes during Phytophthora species saprophytic and parasitic phases under nitro-oxidative stress is also briefly discussed.

Indexed as

Epigenesis, GeneticHistonesPhytophthoraAcetylationHistone AcetyltransferasesHistone DeacetylasesPhylogenyHistone AcetyltransferasesHistone DeacetylasesHistonesepigenetic modificationshistone acetyltransferaseshistone deacetylasesnitro‐oxidative stressoomycetesPhytophthora spp.

Identifiers

PMID39034655
PMCPMC11261156

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.