Evidence map›Paper›PMID 39033203›Full record

ArticleNPJ precision oncology2024

Ancestry-associated co-alteration landscape of KRAS and EGFR-altered non-squamous NSCLC.

Saumya D Sisoudiya, Armande Ang Houle, Tharu Fernando, Timothy R Wilson, Jennifer L Schutzman, Jessica Lee, Alexa Schrock, Ethan S Sokol, Smruthy Sivakumar, Zhen Shi and 1 more

Abstract read
In one paragraph

Article in NPJ precision oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Explainable 1-mm Peritumoral CT Radiomics forCancer control : journal of the Moffitt Cancer Center
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Saumya D SisoudiyaFoundation Medicine Inc., Boston, MA, USA.ORCID http://orcid.org/0000-0001-7276-8084
Armande Ang HouleGenentech Inc., South San Francisco, CA, USA.
Tharu FernandoGenentech Inc., South San Francisco, CA, USA.
Timothy R WilsonGenentech Inc., South San Francisco, CA, USA.
Jennifer L SchutzmanGenentech Inc., South San Francisco, CA, USA.
Jessica LeeFoundation Medicine Inc., Boston, MA, USA.ORCID http://orcid.org/0000-0002-4333-5092
Alexa SchrockFoundation Medicine Inc., Boston, MA, USA.
Ethan S SokolFoundation Medicine Inc., Boston, MA, USA.
Smruthy SivakumarFoundation Medicine Inc., Boston, MA, USA. ssivakumar@foundationmedicine.com.
Zhen ShiGenentech Inc., South San Francisco, CA, USA. shi.zhen@gene.com.
Gaurav PathriaGenentech Inc., South San Francisco, CA, USA. gauravpathria@gmail.com.ORCID http://orcid.org/0000-0001-6566-7031

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Racial/ethnic disparities mar NSCLC care and treatment outcomes. While socioeconomic factors and access to healthcare are important drivers of NSCLC disparities, a deeper understanding of genetic ancestry-associated genomic landscapes can better inform the biology and the treatment actionability for these tumors. We present a comprehensive ancestry-based prevalence and co-alteration landscape of genomic alterations and immunotherapy-associated biomarkers in patients with KRAS and EGFR-altered non-squamous (non-Sq) NSCLC. KRAS was the most frequently altered oncogene in European (EUR) and African (AFR), while EGFR alterations predominated in East Asian (EAS), South Asian (SAS), and Admixed American (AMR) groups, consistent with prior studies. As expected, STK11 and KEAP1 alterations co-occurred with KRAS alterations while showing mutual exclusivity with EGFR alterations. EAS and AMR KRAS-altered non-Sq NSCLC showed lower rates of co-occurring STK11 and KEAP1 alterations relative to other ancestry groups. Ancestry-specific co-alterations included the co-occurrence of KRAS and GNAS alterations in AMR, KRAS, and ARID1A alterations in SAS, and the mutual exclusivity of KRAS and NF1 alterations in the EUR and AFR ancestries. Contrastingly, EGFR-altered tumors exhibited a more conserved co-alteration landscape across ancestries. AFR exhibited the highest tumor mutational burden, with potential therapeutic implications for these tumors.

Identifiers

PMID39033203
PMCPMC11271287

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.