Evidence map›Paper›PMID 39031747›Full record

ArticleChemistryOpen2024

Phytoconstituents of Citrus limon (Lemon) as Potential Inhibitors Against Multi Targets of SARS-CoV-2 by Use of Molecular Modelling and In Vitro Determination Approaches.

Kannan Raman, Rajagopal Kalirajan, Fahadul Islam, Srikanth Jupudi, Divakar Selvaraj, Gomathi Swaminathan, Laliteshwar Pratap Singh, Ritesh Rana, Shopnil Akash, Md Rezaul Islam and 6 more

Abstract read
In one paragraph

Article in ChemistryOpen, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Kannan RamanDepartment of Pharmaceutical Chemistry, JSS College of Pharmacy, JSS Academy of Higher Education & Research, Ooty, 643001, The Nilgiris, Tamilnadu, India.
Rajagopal KalirajanDepartment of Pharmaceutical Chemistry, JSS College of Pharmacy, JSS Academy of Higher Education & Research, Ooty, 643001, The Nilgiris, Tamilnadu, India.
Fahadul IslamDepartment of Pharmacy, Faculty of Allied Health Sciences, Daffodil International University, Dhaka, 1207, Bangladesh.
Srikanth JupudiDepartment of Pharmaceutical Chemistry, JSS College of Pharmacy, JSS Academy of Higher Education & Research, Ooty, 643001, The Nilgiris, Tamilnadu, India.
Divakar SelvarajDepartment of Pharmaceutical Chemistry, JSS College of Pharmacy, JSS Academy of Higher Education & Research, Ooty, 643001, The Nilgiris, Tamilnadu, India.
Gomathi SwaminathanDepartment of Pharmaceutical Chemistry, JSS College of Pharmacy, JSS Academy of Higher Education & Research, Ooty, 643001, The Nilgiris, Tamilnadu, India.
Laliteshwar Pratap SinghNarayan Institute of Pharmacy, Gopal Narayan Singh University, Jamuhar, Sasaram, Rohtas, 821305, Bihar, India.
Ritesh RanaDepartment of Pharmaceutical Sciences (Pharmaceutics), Himachal Institute of Pharmaceutical Education and Research (HIPER), Bela, Nadaun, Hamirpur, Himachal Pradesh, 177042, India.
Shopnil AkashDepartment of Pharmacy, Faculty of Allied Health Sciences, Daffodil International University, Dhaka, 1207, Bangladesh.
Md Rezaul IslamDepartment of Pharmacy, Faculty of Allied Health Sciences, Daffodil International University, Dhaka, 1207, Bangladesh.
Firzan NainuDepartment of Pharmacy, Faculty of Pharmacy, Hasanuddin University, Makassar, 90245, Indonesia.
Talha Bin EmranDepartment of Pharmacy, Faculty of Allied Health Sciences, Daffodil International University, Dhaka, 1207, Bangladesh.
Turki M DawoudDepartment of Botany and Microbiology, College of Science, King Saud University, P. O. BOX 2455, Riyadh, 11451, Saudi Arabia.
Mohammed BourhiaDepartment of Chemistry and Biochemistry, Faculty of Medicine and Pharmacy, Ibn Zohr University, Laayoune, 70000, Morocco.
Musaab DauelbaitDepartment of Scientific Translation, Faculty of Translation, University of Bahri, Khartoum, 11111, Sudan.ORCID 0009-0003-0685-8243
Rashu BaruaFoundations of Medicine, Diabetes and Obesity Research Center, New York University Grossman Long Island School of Medicine, 101 Mineola Blvd, Mineola, New York, USA.

Funding

AICTE, MHRD, Government of India 1-1/IC/DDH/2020-21JSS Academy of Higher Education & Research, MysuruJSS College of PharmacyKing Saud University, Riyadh, Saudi ArabiaOoty and Schrodinger LLC, Bengaluru, IndiaResearchers Supporting Project RSP2024R197
6 · The paper itself

Abstract

In the present work, phytoconstituents from Citrus limon are computationally tested against SARS-CoV-2 target protein such as Mpro - (5R82.pdb), Spike - (6YZ5.pdb) &RdRp - (7BTF.pdb) for COVID-19. Docking was done by glide model, QikProp was performed by in silico ADMET screening & Prime MM-GB/SA modules were used to define binding energy. When compared with approved COVID-19 drugs such as Remdesivir, Ritonavir, Lopinavir, and Hydroxychloroquine, plant-based constituents such as Quercetin, Rutoside, Naringin, Eriocitrin, and Hesperidin. bind with significant G-scores to the active SARS-CoV-2 place. The constituents Rutoside and Eriocitrin were studied in each MD simulation in 100 ns against 3 proteins 5R82.pdb, 6YZ5.pdb and 7BTF.pdb.We performed an assay with significant natural compounds from contacts and in silico results (Rutin, Eriocitrin, Naringin, Hesperidin) using 3CL protease assay kit (B.11529 Omicron variant). This kit contained 3CL inhibitor GC376 as Control. The IC

Indexed as

Antiviral AgentsCitrusMolecular Docking SimulationSARS-CoV-2Coronavirus 3C ProteasesCOVID-19COVID-19 Drug TreatmentHumansMolecular Dynamics SimulationPhytochemicalsSpike Glycoprotein, Coronavirus3C-like proteinase, SARS-CoV-2Antiviral AgentsCoronavirus 3C ProteasesPhytochemicalsSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2in anti-SARS-CoV-2 determinationMain proteaseMD simulationMMGBSARdRpSpike protein

Identifiers

PMID39031747
PMCPMC11457754

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.