Evidence map›Paper›PMID 39030685›Full record

ArticleThe ISME journal2024

Osmoregulation in freshwater anaerobic methane-oxidizing archaea under salt stress.

Maider J Echeveste Medrano, Andy O Leu, Martin Pabst, Yuemei Lin, Simon J McIlroy, Gene W Tyson, Jitske van Ede, Irene Sánchez-Andrea, Mike S M Jetten, Robert Jansen and 1 more

Abstract read
In one paragraph

Article in The ISME journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Metabolic response ofFrontiers in microbiology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Maider J Echeveste MedranoDepartment of Microbiology, Radboud Institute for Biological and Environmental Sciences (RIBES), Radboud University, Heyendaalseweg 135, 6525AJ Nijmegen, The Netherlands.
Andy O LeuCentre for Microbiome Research (CMR), School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute (TRI), 37 Kent Street, Woolloongabba, QLD 4102, Australia.
Martin PabstDepartment of Environmental Biotechnology, TU-Delft University, Van der Maasweg 9, 2629HZ Delft, The Netherlands.
Yuemei LinDepartment of Environmental Biotechnology, TU-Delft University, Van der Maasweg 9, 2629HZ Delft, The Netherlands.
Simon J McIlroyCentre for Microbiome Research (CMR), School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute (TRI), 37 Kent Street, Woolloongabba, QLD 4102, Australia.
Gene W TysonCentre for Microbiome Research (CMR), School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute (TRI), 37 Kent Street, Woolloongabba, QLD 4102, Australia.
Jitske van EdeDepartment of Environmental Biotechnology, TU-Delft University, Van der Maasweg 9, 2629HZ Delft, The Netherlands.
Irene Sánchez-AndreaDepartment of Environmental Sciences for Sustainability, IE University, C. Cardenal Zúñiga 12, 40003 Segovia, Spain.
Mike S M JettenDepartment of Microbiology, Radboud Institute for Biological and Environmental Sciences (RIBES), Radboud University, Heyendaalseweg 135, 6525AJ Nijmegen, The Netherlands.
Robert JansenDepartment of Microbiology, Radboud Institute for Biological and Environmental Sciences (RIBES), Radboud University, Heyendaalseweg 135, 6525AJ Nijmegen, The Netherlands.
Cornelia U WelteDepartment of Microbiology, Radboud Institute for Biological and Environmental Sciences (RIBES), Radboud University, Heyendaalseweg 135, 6525AJ Nijmegen, The Netherlands.

Funding

Australian Research Council FT190100211ERC 854088NWO 024.002.002NWO-VIDI VI.Vidi.223.012
6 · The paper itself

Abstract

Climate change-driven sea level rise threatens freshwater ecosystems and elicits salinity stress in microbiomes. Methane emissions in these systems are largely mitigated by methane-oxidizing microorganisms. Here, we characterized the physiological and metabolic response of freshwater methanotrophic archaea to salt stress. In our microcosm experiments, inhibition of methanotrophic archaea started at 1%. However, during gradual increase of salt up to 3% in a reactor over 12 weeks, the culture continued to oxidize methane. Using gene expression profiles and metabolomics, we identified a pathway for salt-stress response that produces the osmolyte of anaerobic methanotrophic archaea: N(ε)-acetyl-β-L-lysine. An extensive phylogenomic analysis on N(ε)-acetyl-β-L-lysine-producing enzymes revealed that they are widespread across both bacteria and archaea, indicating a potential horizontal gene transfer and a link to BORG extrachromosomal elements. Physicochemical analysis of bioreactor biomass further indicated the presence of sialic acids and the consumption of intracellular polyhydroxyalkanoates in anaerobic methanotrophs during salt stress.

Indexed as

ArchaeaFresh WaterMethaneOsmoregulationPhylogenySalt StressAnaerobiosisOxidation-ReductionMethaneANME“Ca. Methanoperedens”compatible solutesmetabolomicsmethanotrophsalinity adaptation

Identifiers

PMID39030685
PMCPMC11337218

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.