Evidence map›Paper›PMID 39030471›Full record

ArticleBMC plant biology2024

Integrative analysis of the transcriptome and proteome reveals the molecular responses of tobacco to boron deficiency.

Jinbin Lin, Xiangli Zheng, Jing Xia, Rongrong Xie, Jingjuan Gao, Rongrong Ye, Tingmin Liang, Mengyu Qu, Yaxin Luo, Yuemin Wang and 7 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Jinbin Lin *Ministerial and Provincial Joint Innovation Centre for Safety Production of Cross-Strait Crops, College of Geography and Oceanography, Minjiang University, Fuzhou, 350108, China.
Xiangli Zheng *Fujian Key Laboratory of Agricultural Ecological Process of Red Soil Mountain, Agricultural Ecology Institute, Fujian Academy of Agricultural Sciences, Fuzhou, 350013, China.
Jing XiaCollege of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Rongrong XieFujian Institute of Tobacco Sciences, Fuzhou, 350003, China.
Jingjuan GaoFujian Institute of Tobacco Sciences, Fuzhou, 350003, China.
Rongrong YeMinisterial and Provincial Joint Innovation Centre for Safety Production of Cross-Strait Crops, College of Geography and Oceanography, Minjiang University, Fuzhou, 350108, China.
Tingmin LiangMinisterial and Provincial Joint Innovation Centre for Safety Production of Cross-Strait Crops, College of Geography and Oceanography, Minjiang University, Fuzhou, 350108, China.
Mengyu QuMinisterial and Provincial Joint Innovation Centre for Safety Production of Cross-Strait Crops, College of Geography and Oceanography, Minjiang University, Fuzhou, 350108, China.
Yaxin LuoMinisterial and Provincial Joint Innovation Centre for Safety Production of Cross-Strait Crops, College of Geography and Oceanography, Minjiang University, Fuzhou, 350108, China.
Yuemin WangFujian Institute of Tobacco Sciences, Fuzhou, 350003, China.
Yuqin KeCollege of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Chunying LiFujian Institute of Tobacco Sciences, Fuzhou, 350003, China.
Jinping GuoFujian Institute of Tobacco Sciences, Fuzhou, 350003, China.
Jianjun LuMinisterial and Provincial Joint Innovation Centre for Safety Production of Cross-Strait Crops, College of Geography and Oceanography, Minjiang University, Fuzhou, 350108, China.
Weiqi TangMinisterial and Provincial Joint Innovation Centre for Safety Production of Cross-Strait Crops, College of Geography and Oceanography, Minjiang University, Fuzhou, 350108, China. tangweiqi@jointgene.com.
Wenqing LiFujian Institute of Tobacco Sciences, Fuzhou, 350003, China. li-wqfjyc@163.com.
Songbiao ChenMinisterial and Provincial Joint Innovation Centre for Safety Production of Cross-Strait Crops, College of Geography and Oceanography, Minjiang University, Fuzhou, 350108, China. sbchen@fjage.org.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBoron (B) is an essential micronutrient for plants. Inappropriate B supply detrimentally affects the productivity of numerous crops. Understanding of the molecular responses of plants to different B supply levels would be of significance in crop improvement and cultivation practices to deal with the problem.

resultsWe conducted a comprehensive analysis of the transcriptome and proteome of tobacco seedlings to investigate the expression changes of genes/proteins in response to different B supply levels, with a particular focus on B deficiency. The global gene and protein expression profiles revealed the potential mechanisms involved in the responses of tobacco to B deficiency, including up-regulation of the NIP5;1-BORs module, complex regulation of genes/proteins related to cell wall metabolism, and up-regulation of the antioxidant machinery.

conclusionOur results demonstrated that B deficiency caused severe morphological and physiological disorders in tobacco seedlings, and revealed dynamic expression changes of tobacco genes/proteins in response to different B supply levels, especially to B deficiency, thus offering valuable insights into the molecular responses of tobacco to B deficiency.

Indexed as

BoronNicotianaProteomeTranscriptomeGene Expression ProfilingGene Expression Regulation, PlantPlant ProteinsSeedlingsBoronPlant ProteinsProteomeAntioxidant machineryBORBoronCell wall-related genesNIPProteome analysisTobaccoTranscriptome analysis

Identifiers

PMID39030471
PMCPMC11264865

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.