Evidence map›Paper›PMID 39030393›Full record

ArticleCommunications biology2024

Diversity of post-translational modifications and cell signaling revealed by single cell and single organelle mass spectrometry.

Dong-Gi Mun, Firdous A Bhat, Neha Joshi, Leticia Sandoval, Husheng Ding, Anu Jain, Jane A Peterson, Taewook Kang, Ganesh P Pujari, Jennifer L Tomlinson and 9 more

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Precision Profiling of the Cardiovascular Post-Translationally Modified Proteome.Journal of cardiovascular development and disease · 2026
    Review
  6. Article
  7. Review
  8. Review
  9. Profiling the landscape of cysteine posttranslational modifications in brain aging and neurodegeneration.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2025
    Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Dong-Gi MunDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55905, USA.
Firdous A BhatDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0003-3632-6718
Neha JoshiDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0001-9232-1589
Leticia SandovalDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55905, USA.
Husheng DingDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55905, USA.
Anu JainDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55905, USA.
Jane A PetersonProteomics Core, Mayo Clinic, Rochester, MN, 55905, USA.
Taewook KangDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0003-3959-4777
Ganesh P PujariDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55905, USA.
Jennifer L TomlinsonDepartment of Surgery, Mayo Clinic, Rochester, MN, 55905, USA.
Rohit BudhrajaDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0002-4209-2180
Roman M ZenkaProteomics Core, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0002-8337-2314
Nagarajan KannanDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0002-8825-2178
Benjamin R KippDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55905, USA.
Surendra DasariDepartment of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, 55905, USA.
Alexandre Gaspar-MaiaDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0001-8528-5575
Rory L SmootDepartment of Surgery, Mayo Clinic, Rochester, MN, 55905, USA.
Richard K KandasamyDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55905, USA. kandasamy.richardkumaran@mayo.edu.ORCID 0000-0002-0894-1222
Akhilesh PandeyDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55905, USA. pandey.akhilesh@mayo.edu.ORCID 0000-0001-9943-6127

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI Lila J. Rutten · 1985 to 2026
$151.3M
The Role of CHFR in Tumorigenesis and Paclitaxel-Sensitivity in Breast CancerP50CA116201 · NCI · MAYO CLINIC ROCHESTER · PI PETER C LUCAS · 2005 to 2026
$49.9M
Use of microfluidic tumor cultures to enable clinical trials of therapies for ovarian cancerP50CA136393 · NCI · MAYO CLINIC ROCHESTER · PI SCOTT H KAUFMANN · 2009 to 2026
$37.0M
Mayo Clinic Center for Clinical ProteomicsU01CA271410 · NCI · MAYO CLINIC ROCHESTER · PI Rafael Fonseca, AKHILESH PANDEY · 2022 to 2026
$5.3M
NCI NIH HHS P30 CA015083NCI NIH HHS P50 CA116201NCI NIH HHS P50 CA136393NCI NIH HHS U01 CA271410U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) P30CA15083
6 · The paper itself

Abstract

The rapid evolution of mass spectrometry-based single-cell proteomics now enables the cataloging of several thousand proteins from single cells. We investigated whether we could discover cellular heterogeneity beyond proteome, encompassing post-translational modifications (PTM), protein-protein interaction, and variants. By optimizing the mass spectrometry data interpretation strategy to enable the detection of PTMs and variants, we have generated a high-definition dataset of single-cell and nuclear proteomic-states. The data demonstrate the heterogeneity of cell-states and signaling dependencies at the single-cell level and reveal epigenetic drug-induced changes in single nuclei. This approach enables the exploration of previously uncharted single-cell and organellar proteomes revealing molecular characteristics that are inaccessible through RNA profiling.

Indexed as

Mass SpectrometryProtein Processing, Post-TranslationalProteomicsSignal TransductionSingle-Cell AnalysisHumansOrganellesProteomeProteome

Identifiers

PMID39030393
PMCPMC11271535

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.