Evidence map›Paper›PMID 39030299›Full record

ReviewCommunications biology2024

Anisotropic scrunching of SMC with a baton-pass mechanism.

Kyoung-Wook Moon, Do-Gyun Kim, Je-Kyung Ryu

Abstract readReview
In one paragraph

Review in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Kyoung-Wook Moon *Department of Physics and Astronomy, Seoul National University, Seoul, South Korea.
Do-Gyun Kim *Department of Physics and Astronomy, Seoul National University, Seoul, South Korea.
Je-Kyung RyuDepartment of Physics and Astronomy, Seoul National University, Seoul, South Korea. prof.love@snu.ac.kr.ORCID 0000-0002-0545-9502

Funding

National Research Foundation of Korea (NRF) RS-2023-00212694, RS-2023-00265412, RS-2023-00218318, RS-2023-00301976
6 · The paper itself

Abstract

DNA-loop extrusion is considered to be a universal principle of structural maintenance of chromosome (SMC) proteins with regard to chromosome organization. Despite recent advancements in structural dynamics studies that involve the use of cryogenic-electron microscopy (Cryo-EM), atomic force microscopy (AFM), etc., the precise molecular mechanism underlying DNA-loop extrusion by SMC proteins remains the subject of ongoing discussions. In this context, we propose a scrunching model that incorporates the anisotropic motion of SMC folding with a baton-pass mechanism, offering a potential explanation of how a "DNA baton" is transferred from the hinge domain to a DNA pocket via an anisotropic hinge motion. This proposed model provides insights into how SMC proteins unidirectionally extrude DNA loops in the direction of loop elongation while also maintaining the stability of a DNA loop throughout the dynamic process of DNA-loop extrusion.

Indexed as

DNAAnisotropyCell Cycle ProteinsChromosomal Proteins, Non-HistoneCryoelectron MicroscopyMicroscopy, Atomic ForceModels, MolecularNucleic Acid ConformationCell Cycle ProteinsChromosomal Proteins, Non-HistoneDNA

Identifiers

PMID39030299
PMCPMC11271495

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.