Evidence map›Paper›PMID 39029464›Full record

ArticleCancer cell2024

Mammalian SWI/SNF complex activity regulates POU2F3 and constitutes a targetable dependency in small cell lung cancer.

Leslie Duplaquet, Kevin So, Alexander W Ying, Shreoshi Pal Choudhuri, Xinyue Li, Grace D Xu, Yixiang Li, Xintao Qiu, Rong Li, Shilpa Singh and 19 more

Abstract read
In one paragraph

Article in Cancer cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Positive selection screen identifies natural product β-catenin inactivators.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  7. Oncogenic Gα signaling requires AP-3-dependent recruitment to the endolysosomal compartment.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  9. SMARCD1 and Its Functional Relevance in SWI/SNF and Cancer.International journal of molecular sciences · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

29 authors.

Leslie DuplaquetDepartment of Medical Oncology, Dana-Farber Cancer Institute and Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02215, USA.
Kevin SoDepartment of Pediatric Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA 02215, USA; Biological and Biomedical Sciences Graduate Program, Harvard Medical School, Boston, MA 02115, USA.
Alexander W YingDepartment of Pediatric Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA 02215, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Shreoshi Pal ChoudhuriHamon Center for Therapeutic Oncology Research, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Internal Medicine and Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Xinyue LiDepartment of Medical Oncology, Dana-Farber Cancer Institute and Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02215, USA.
Grace D XuDepartment of Pediatric Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA 02215, USA.
Yixiang LiDepartment of Medical Oncology, Dana-Farber Cancer Institute and Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02215, USA.
Xintao QiuCenter for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Rong LiCenter for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Shilpa SinghDepartment of Medical Oncology, Dana-Farber Cancer Institute and Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02215, USA.
Xiaoli S WuCold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY 11724, USA.
Seth HamiltonHamon Center for Therapeutic Oncology Research, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Internal Medicine and Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Victor D ChienHamon Center for Therapeutic Oncology Research, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Internal Medicine and Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Qi LiuDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Jun QiDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Tim D D SomervilleNovartis BioMedical Research, Cambridge, MA 02139, USA.
Hillary M HeilingDepartment of Data Science, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Emanuele MazzolaDepartment of Data Science, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Yenarae LeeBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Thomas ZollerNovartis BioMedical Research, Cambridge, MA 02139, USA.
Christopher R VakocCold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY 11724, USA.
John G DoenchBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
William C ForresterNovartis BioMedical Research, Cambridge, MA 02139, USA.
Tinya AbramsNovartis BioMedical Research, Cambridge, MA 02139, USA.
Henry W LongCenter for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Matthew J NiederstNovartis BioMedical Research, Cambridge, MA 02139, USA.
Benjamin J DrapkinHamon Center for Therapeutic Oncology Research, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Internal Medicine and Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Cigall KadochDepartment of Pediatric Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA 02215, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address: cigall_kadoch@dfci.harvard.edu.
Matthew G OserDepartment of Medical Oncology, Dana-Farber Cancer Institute and Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02215, USA; Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA. Electronic address: matthew_oser@dfci.harvard.edu.

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI Tobias Janowitz · 1987 to 2026
$118.9M
Exploiting POU2F3 addiction in the tuft cell variant of small cell lung cancerU01CA242919 · NCI · COLD SPRING HARBOR LABORATORY · PI VAKOC, CHRISTOPHER · 2019 to 2023
$2.2M
Biology and vulnerabilities of POU2F3+ tuft cell-like carcinomasR01CA290004 · NCI · COLD SPRING HARBOR LABORATORY · PI Christopher Vakoc · 2024 to 2026
$2.0M
Mechanisms by which LSD1 Promotes Neuroendocrine Differentiation and Small Cell Lung CancerR37CA269990 · NCI · DANA-FARBER CANCER INST · PI Matthew Gilbert Oser · 2023 to 2026
$1.8M
Dissecting and overcoming cross-resistance to DNA damaging agents in SCLCK08CA237832 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI DRAPKIN, BENJAMIN J · 2020 to 2024
$1.2M
NCI NIH HHS K08 CA237832NCI NIH HHS P30 CA045508NCI NIH HHS R01 CA290004NCI NIH HHS R37 CA269990NCI NIH HHS U01 CA242919
6 · The paper itself

Abstract

Small cell lung cancers (SCLCs) are composed of heterogeneous subtypes marked by lineage-specific transcription factors, including ASCL1, NEUROD1, and POU2F3. POU2F3-positive SCLCs, ∼12% of all cases, are uniquely dependent on POU2F3 itself; as such, approaches to attenuate POU2F3 expression may represent new therapeutic opportunities. Here using genome-scale screens for regulators of POU2F3 expression and SCLC proliferation, we define mSWI/SNF complexes as top dependencies specific to POU2F3-positive SCLC. Notably, chemical disruption of mSWI/SNF ATPase activity attenuates proliferation of all POU2F3-positive SCLCs, while disruption of non-canonical BAF (ncBAF) via BRD9 degradation is effective in pure non-neuroendocrine POU2F3-SCLCs. mSWI/SNF targets to and maintains accessibility over gene loci central to POU2F3-mediated gene regulatory networks. Finally, clinical-grade pharmacologic disruption of SMARCA4/2 ATPases and BRD9 decreases POU2F3-SCLC tumor growth and increases survival in vivo. These results demonstrate mSWI/SNF-mediated governance of the POU2F3 oncogenic program and suggest mSWI/SNF inhibition as a therapeutic strategy for POU2F3-positive SCLCs.

Indexed as

Gene Expression Regulation, NeoplasticLung NeoplasmsSmall Cell Lung CarcinomaTranscription FactorsAnimalsCell Line, TumorCell ProliferationChromosomal Proteins, Non-HistoneHumansMiceOctamer Transcription Factor-3Octamer Transcription FactorsChromosomal Proteins, Non-HistoneOctamer Transcription Factor-3Octamer Transcription FactorsPOU2F3 protein, humanSWI-SNF-B chromatin-remodeling complexTranscription FactorsBRD9FHD-286FHD-60mSWI/SNFneuroendocrineOCA-T1OCA-T2POU2F3small cell lung cancerSMARCD1

Identifiers

PMID39029464
PMCPMC11494612

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.