Evidence map›Paper›PMID 39027650›Full record

ReviewComputational and structural biotechnology journal2024

A comprehensive overview of recent advances in generative models for antibodies.

Fanxu Meng, Na Zhou, Guangchun Hu, Ruotong Liu, Yuanyuan Zhang, Ming Jing, Qingzhen Hou

Abstract readReview
In one paragraph

Review in Computational and structural biotechnology journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Fanxu MengCollege of Chemical Engineering, Qingdao University of Science and Technology, Qingdao 266042, China.
Na ZhouDepartment of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250100, China.
Guangchun HuSchool of Information Science and Engineering, University of Jinan, Jinan 250022, China.
Ruotong LiuDepartment of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250100, China.
Yuanyuan ZhangCollege of Chemical Engineering, Qingdao University of Science and Technology, Qingdao 266042, China.
Ming JingKey Laboratory of Computing Power Network and Information Security, Ministry of Education, Shandong Computer Science Center, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250353, China.
Qingzhen HouDepartment of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250100, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Therapeutic antibodies are an important class of biopharmaceuticals. With the rapid development of deep learning methods and the increasing amount of antibody data, antibody generative models have made great progress recently. They aim to solve the antibody space searching problems and are widely incorporated into the antibody development process. Therefore, a comprehensive introduction to the development methods in this field is imperative. Here, we collected 34 representative antibody generative models published recently and all generative models can be divided into three categories: sequence-generating models, structure-generating models, and hybrid models, based on their principles and algorithms. We further studied their performance and contributions to antibody sequence prediction, structure optimization, and affinity enhancement. Our manuscript will provide a comprehensive overview of the status of antibody generative models and also offer guidance for selecting different approaches.

Indexed as

Antibody generative modelDeep learningProtein sequenceProtein structureTherapeutic antibody

Identifiers

PMID39027650
PMCPMC11254834

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.