Evidence map›Paper›PMID 39027644›Full record

ArticleBioinformatics advances2024

consICA: an R package for robust reference-free deconvolution of multi-omics data.

Maryna Chepeleva, Tony Kaoma, Andrei Zinovyev, Reka Toth, Petr V Nazarov

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Bioinformatics advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Maryna ChepelevaMultiomics Data Science Research Group, Department of Cancer Research, Luxembourg Institute of Health, Strassen L-1445, Luxembourg.ORCID https://orcid.org/0000-0003-3036-4916
Tony KaomaBioinformatics and AI Unit, Department of Medical Informatics, Luxembourg Institute of Health, Strassen L-1445, Luxembourg.ORCID https://orcid.org/0000-0002-1269-4826
Andrei ZinovyevIn Silico R&D, Evotec, Toulouse 31100, France.ORCID https://orcid.org/0000-0002-9517-7284
Reka TothMultiomics Data Science Research Group, Department of Cancer Research, Luxembourg Institute of Health, Strassen L-1445, Luxembourg.ORCID https://orcid.org/0000-0002-6096-1052
Petr V NazarovMultiomics Data Science Research Group, Department of Cancer Research, Luxembourg Institute of Health, Strassen L-1445, Luxembourg.ORCID https://orcid.org/0000-0003-3443-0298

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Motivation: Deciphering molecular signals from omics data helps understanding cellular processes and disease progression. Effective algorithms for extracting these signals are essential, with a strong emphasis on robustness and reproducibility. Results: R/Bioconductor package Availability and implementation: The package is implemented in R and available under MIT license at Bioconductor (https://bioconductor.org/packages/consICA) or at GitHub (https://github.com/biomod-lih/consICA).

Identifiers

PMID39027644
PMCPMC11257712

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.