Evidence map›Paper›PMID 39026890›Full record

ArticlebioRxiv : the preprint server for biology2024

Quantifying social roles in multi-animal videos using subject-aware deep-learning.

Kelly Goss, Lezio S Bueno-Junior, Katherine Stangis, Théo Ardoin, Hanna Carmon, Jie Zhou, Rohan Satapathy, Isabelle Baker, Carolyn E Jones-Tinsley, Miranda M Lim and 6 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Kelly GossLife Sciences Institute and Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA.
Lezio S Bueno-JuniorDepartment of Psychiatry, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Katherine StangisMichigan Neuroscience Institute, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Théo ArdoinMaster Biodiversité Ecologie et Evolution, Université Paris-Saclay, Orsay, France.
Hanna CarmonDepartment of Pharmacology and Psychology Department (Biopsychology), University of Michigan, Ann Arbor, MI 48109, USA.
Jie ZhouDepartment of Computer Science, Northern Illinois University, DeKalb, IL 60115, USA.
Rohan SatapathyLife Sciences Institute and Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA.
Isabelle BakerLife Sciences Institute and Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA.
Carolyn E Jones-TinsleyVeterans Affairs VISN20 Northwest MIRECC, VA Portland Health Care System, Portland, OR 97239, USA.
Miranda M LimVeterans Affairs VISN20 Northwest MIRECC, VA Portland Health Care System, Portland, OR 97239, USA.
Brendon O WatsonDepartment of Psychiatry, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Cédric SueurUniversité de Strasbourg, IPHC UMR7178, CNRS, Strasbourg, France.ORCID 0000-0001-8206-2739
Carrie R FerrarioDepartment of Pharmacology and Psychology Department (Biopsychology), University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0002-9673-7028
Geoffrey G MurphyMichigan Neuroscience Institute, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Bing YeLife Sciences Institute and Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0002-8828-4065
Yujia HuLife Sciences Institute and Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA.

Funding

Research Education ComponentP30AG066518 · NIA · OREGON HEALTH & SCIENCE UNIVERSITY · PI KEVIN M DUFF, Lisa C Silbert · 2020 to 2026
$28.6M
Animal Models of AddictionR01DA044204 · NIDA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FERRARIO, CARRIE · 2019 to 2023
$2.4M
Mechanisms that underlie cross-modal sensory plasticity - Diversity Research Supplements to Promote Diversity in Health-Related ResearchR01NS104299 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI YE, BING · 2018 to 2022
$1.7M
The assembly of population coding networksR01NS128500 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI TZUMIN LEE · 2023 to 2026
$1.5M
Effects of early life sleep disruption on prefrontal cortex electrophysiological state and affiliation/attachmentR01MH131592 · NIMH · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LIM, MIRANDA M, WATSON, BRENDON O · 2023 to 2024
$1.4M
Correlations, fluctuations and variability in neural networksZ01DK013024 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI CHOW, CARSON · 2007 to 2008
$543k
Intramural NIH HHS Z01 DK013024NIA NIH HHS P30 AG066518NIDA NIH HHS R01 DA044204NIMH NIH HHS R01 MH131592NINDS NIH HHS R01 NS104299NINDS NIH HHS R01 NS128500
6 · The paper itself

Abstract

Analyzing social behaviors is critical for many fields, including neuroscience, psychology, and ecology. While computational tools have been developed to analyze videos containing animals engaging in limited social interactions under specific experimental conditions, automated identification of the social roles of freely moving individuals in a multi-animal group remains unresolved. Here we describe a deep-learning-based system - named LabGym2 - for identifying and quantifying social roles in multi-animal groups. This system uses a subject-aware approach: it evaluates the behavioral state of every individual in a group of two or more animals while factoring in its social and environmental surroundings. We demonstrate the performance of subject-aware deep-learning in different species and assays, from partner preference in freely-moving insects to primate social interactions in the field. Our subject-aware deep learning approach provides a controllable, interpretable, and efficient framework to enable new experimental paradigms and systematic evaluation of interactive behavior in individuals identified within a group.

Identifiers

PMID39026890
PMCPMC11257443

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.