Evidence map›Paper›PMID 39026887›Full record

ArticlebioRxiv : the preprint server for biology2025

Condenzymes: Biomolecular condensates with inherent catalytic activities.

Michael W Chen, Xiao Guo, Mina Farag, Naixin Qian, Xiaowei Song, Anton Ni, Vicky Liu, Xia Yu, Yuefeng Ma, Leshan Yang and 7 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Michael W ChenDepartment of Biomedical Engineering, Center for Biomolecular Condensates, James F. McKelvey School of Engineering Washington University in St. Louis, St. Louis, MO 63130, USA.
Xiao GuoDepartment of Biomedical Engineering, Center for Biomolecular Condensates, James F. McKelvey School of Engineering Washington University in St. Louis, St. Louis, MO 63130, USA.
Mina FaragDepartment of Biomedical Engineering, Center for Biomolecular Condensates, James F. McKelvey School of Engineering Washington University in St. Louis, St. Louis, MO 63130, USA.
Naixin QianDepartment of Chemistry, Columbia University, New York, NY 10027, USA.
Xiaowei SongDepartment of Chemistry, Stanford University, Stanford, CA 94305, USA.
Anton NiDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, USA.
Vicky LiuDepartment of Biomedical Engineering, Center for Biomolecular Condensates, James F. McKelvey School of Engineering Washington University in St. Louis, St. Louis, MO 63130, USA.
Xia YuDepartment of Chemistry, Stanford University, Stanford, CA 94305, USA.
Yuefeng MaDepartment of Biomedical Engineering, Center for Biomolecular Condensates, James F. McKelvey School of Engineering Washington University in St. Louis, St. Louis, MO 63130, USA.
Leshan YangDepartment of Biomedical Engineering, Center for Biomolecular Condensates, James F. McKelvey School of Engineering Washington University in St. Louis, St. Louis, MO 63130, USA.
Wen YuDepartment of Biomedical Engineering, Center for Biomolecular Condensates, James F. McKelvey School of Engineering Washington University in St. Louis, St. Louis, MO 63130, USA.
Matthew R KingDepartment of Biomedical Engineering, Center for Biomolecular Condensates, James F. McKelvey School of Engineering Washington University in St. Louis, St. Louis, MO 63130, USA.
Joonho LeeDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, USA.
Richard N ZareDepartment of Chemistry, Stanford University, Stanford, CA 94305, USA.
Wei MinDepartment of Chemistry, Columbia University, New York, NY 10027, USA.
Rohit V PappuDepartment of Biomedical Engineering, Center for Biomolecular Condensates, James F. McKelvey School of Engineering Washington University in St. Louis, St. Louis, MO 63130, USA.
Yifan DaiDepartment of Biomedical Engineering, Center for Biomolecular Condensates, James F. McKelvey School of Engineering Washington University in St. Louis, St. Louis, MO 63130, USA.

Funding

Super-multiplex optical imaging: development of novel spectroscopy and probes to illuminate complex biomedicineR35GM149256 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Wei Min · 2023 to 2026
$2.8M
Uncovering mechanisms of rRNA flux through the nucleolusF32GM146418 · NIGMS · WASHINGTON UNIVERSITY · PI KING, MATTHEW R · 2022 to 2024
$144k
NIGMS NIH HHS F32 GM146418NIGMS NIH HHS R35 GM149256
6 · The paper itself

Abstract

We report the discovery that chemical reactions can be catalyzed by condensates formed by intrinsically disordered proteins (IDPs). The proteins themselves lack any catalytic activities. Catalytic functions of condensates emerge as a consequence of sequence-dependent mesoscale electrochemical microenvironments created by phase separation. Stimulated Raman spectroscopy suggests that the catalytic behaviors of condensates are attributable to the spatial variations of water activities across condensate interiors and interfaces. We show that condensates are capable of catalyzing diverse cellularly relevant hydrolysis reactions. Through sequence design, the electrochemical properties of condensates can be programmed to exert control over catalytic behaviors. Incorporation of synthetic condensates into live cells alters transcription profiles and enables the activation of gene circuits that depend on products of hydrolysis reactions catalyzed by condensates. Our discovery of suggests that condensates, depending on their composition-dependent electrochemical properties, can be "Condenzymes", which contribute unexpected emergent chemical functions in cells.

Indexed as

Biological WaterBiomolecular condensatesCondenzymesElectrochemistryInherent catalytic functionInterfacePhase transition

Identifiers

PMID39026887
PMCPMC11257451

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.