Evidence map›Paper›PMID 39026161›Full record

ArticleBMC plant biology2024

Genome-wide analysis of the common bean (Phaseolus vulgaris) laccase gene family and its functions in response to abiotic stress.

Tong Cheng, Chunyuan Ren, Jinghan Xu, Huamei Wang, Bowen Wen, Qiang Zhao, Wenjie Zhang, Gaobo Yu, Yuxian Zhang

Abstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Tong ChengCollege of Agriculture, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Chunyuan RenCollege of Agriculture, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Jinghan XuCollege of Agriculture, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Huamei WangCollege of Agriculture, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Bowen WenCollege of Horticulture and Landscape Architecture, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Qiang ZhaoCollege of Agriculture, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Wenjie ZhangCollege of Life Science and Biotechnology, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Gaobo YuCollege of Horticulture and Landscape Architecture, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China. yugaobo81@163.com.
Yuxian ZhangCollege of Agriculture, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China. zyx-lxy@126.com.

Funding

China Agriculture Research System of MOF and MARA CARS-04-PS18Heilongjiang Bayi Agricultural University Support Program for San Heng San Zong TDJH202001Heilongjiang Province's "Revealing the List and Commanding the Leaders" scientific and technological research project 2021ZXJ05B02Natural Science Foundation of Heilongjiang Province LH2022115Project of Soybean Industry Innovation Research Institute of Jiusan 2022101
6 · The paper itself

Abstract

backgroundLaccase (LAC) gene family plays a pivotal role in plant lignin biosynthesis and adaptation to various stresses. Limited research has been conducted on laccase genes in common beans.

results29 LAC gene family members were identified within the common bean genome, distributed unevenly in 9 chromosomes. These members were divided into 6 distinct subclades by phylogenetic analysis. Further phylogenetic analyses and synteny analyses indicated that considerable gene duplication and loss presented throughout the evolution of the laccase gene family. Purified selection was shown to be the major evolutionary force through Ka / Ks. Transcriptional changes of PvLAC genes under low temperature and salt stress were observed, emphasizing the regulatory function of these genes in such conditions. Regulation by abscisic acid and gibberellins appears to be the case for PvLAC3, PvLAC4, PvLAC7, PvLAC13, PvLAC14, PvLAC18, PvLAC23, and PvLAC26, as indicated by hormone induction experiments. Additionally, the regulation of PvLAC3, PvLAC4, PvLAC7, and PvLAC14 in response to nicosulfuron and low-temperature stress were identified by virus-induced gene silence, which demonstrated inhibition on growth and development in common beans.

conclusionsThe research provides valuable genetic resources for improving the resistance of common beans to abiotic stresses and enhance the understanding of the functional roles of the LAC gene family.

Indexed as

LaccaseMultigene FamilyPhaseolusPhylogenyStress, PhysiologicalGene Expression Regulation, PlantGenes, PlantGenome, PlantPlant ProteinsLaccasePlant ProteinsAbiotic stressDevelopmentLaccase gene familyPhaseolus vulgaris

Identifiers

PMID39026161
PMCPMC11264805

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.