ArticleScientific data2024
Genome assembly, Full-length transcriptome, and isoform diversity of Red Snapper, Lutjanus argentimaculatus.
Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
6 citing papers in PubMed.
- Chromosome level genome assembly and full-length transcriptome of blacktip trevally (Caranx heberi).Scientific data · 2026Article
- Genome assembly and Full-length transcriptome of Malabar Red Snapper, Lutjanus malabaricus.Scientific data · 2026Article
- A gap-free, telomere-to-telomere chromosome-scale genome assembly of the mangrove red snapper, Lutjanus argentimaculatus.Scientific data · 2026Article
- Chromosome level genome and full length transcriptome of long whiskers catfish, Mystus gulio (Hamilton, 1822).Scientific data · 2026Article
- Complete mitochondrial genome of the yellow-lined snapper,Mitochondrial DNA. Part B, Resources · 2026Article
- Chromosome-level genome assembly with telomeric repeats at scaffold ends for Rhabdosargus sarba.Scientific data · 2025Article
Corrections and comments
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Authors and funding
8 authors.
Funding
Abstract
The mangrove red snapper, Lutjanus argentimaculatus, is a marine food fish of economic and aquaculture importance. The application of genomic selection-based breeding programs for this species is limited by the absence of a reference genome and transcriptome profiles. The current study attempted to fill this void by generating genomic and transcriptomic resources for red snapper. Using PacBio long reads, and Arima Hi-C linked reads, a scaffold-level genome assembly was generated for L. argentimaculatus. The assembly is of 1.03 Gb comprising of 400 scaffolds with N50 of 33.8 Mb and was assessed to be 97.2% complete upon benchmarking with BUSCO. Full-length transcriptome generated with PacBio Iso-Sequencing strategy using six tissues (muscle, gills, liver, kidney, stomach, and gonad) contained 56,515 isoforms belonging to 18,108 unique genes with N50 length of 3,973 bp. The resources generated will have potential applications in the functional studies, conservation, broodstock management and selective breeding programmes of L. argentimaculatus.
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Registered trials
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