Evidence map›Paper›PMID 39025916›Full record

ArticleScientific data2024

Chromosome-level genome assembly of the two-spotted spider mite Tetranychus urticae.

Li-Jun Cao, Tian-Bo Guan, Jin-Cui Chen, Fangyuan Yang, Jing-Xian Liu, Feng-Liang Jin, Shu-Jun Wei

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Genome size estimation and evolution trends in Acari.Experimental & applied acarology · 2025
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Li-Jun Cao *College of Plant Protection, South China Agricultural University, Guangzhou, China.ORCID 0000-0002-4595-0136
Tian-Bo Guan *College of Plant Protection, South China Agricultural University, Guangzhou, China.
Jin-Cui ChenInstitute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China.
Fangyuan YangInstitute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China.ORCID 0000-0002-8435-3326
Jing-Xian LiuCollege of Plant Protection, South China Agricultural University, Guangzhou, China.
Feng-Liang JinCollege of Plant Protection, South China Agricultural University, Guangzhou, China. jflbang@scau.edu.cn.
Shu-Jun WeiInstitute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China. shujun268@163.com.ORCID 0000-0001-7398-0968

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The two-spotted spider mite, Tetranychus urticae Koch (Acari: Tetranychidae), is a notorious pest in agriculture that has developed resistance to almost all chemical types used for its control. Here, we assembled a chromosome-level genome for the TSSM using Illumina, Nanopore, and Hi-C sequencing technologies. The assembled contigs had a total length of 103.94 Mb with an N50 of 3.46 Mb, with 87.7 Mb of 34 contigs anchored to three chromosomes. The chromosome-level genome assembly had a BUSCO completeness of 94.8%. We identified 15,604 protein-coding genes, with 11,435 genes that could be functionally annotated. The high-quality genome provides invaluable resources for the genetic and evolutionary study of TSSM.

Indexed as

TetranychidaeAnimalsChromosomesGenome

Identifiers

PMID39025916
PMCPMC11258348

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.