Evidence map›Paper›PMID 39025853›Full record

ArticleNature communications2024

Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in Mucorales.

Carlos Lax, Stephen J Mondo, Macario Osorio-Concepción, Anna Muszewska, María Corrochano-Luque, Gabriel Gutiérrez, Robert Riley, Anna Lipzen, Jie Guo, Hope Hundley and 14 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Review
  3. N6-methyladenine DNA modification modulates pathogen virulence in nematodes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. A distinct subclade of AlkB family demethylases in ciliates safeguards the positional fidelity of eukaryotic NProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Future Prospects and Challenges in Mucormycosis Research.Journal of fungi (Basel, Switzerland) · 2025
    Article
  13. Article
  14. Review
  15. Article
  16. The Contribution of Human Antimicrobial Peptides to Fungi.International journal of molecular sciences · 2025
    Review
  17. Article
  18. Role of the putativeMicrobial cell (Graz, Austria) · 2025
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Carlos LaxDepartamento de Genética y Microbiología, Facultad de Biología, Universidad de Murcia, Murcia, Spain.ORCID 0000-0002-2059-303X
Stephen J MondoU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.ORCID 0000-0001-5797-0647
Macario Osorio-ConcepciónDepartamento de Genética y Microbiología, Facultad de Biología, Universidad de Murcia, Murcia, Spain.ORCID 0000-0003-4489-1960
Anna MuszewskaInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5A, 02-106, Warsaw, Poland.ORCID 0000-0002-4578-844X
María Corrochano-LuqueDepartamento de Genética, Facultad de Biología, Universidad de Sevilla, Sevilla, Spain.
Gabriel GutiérrezDepartamento de Genética, Facultad de Biología, Universidad de Sevilla, Sevilla, Spain.ORCID 0000-0002-1354-2883
Robert RileyU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.ORCID 0000-0003-0224-0975
Anna LipzenU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.ORCID 0000-0003-2293-9329
Jie GuoU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Hope HundleyU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Mojgan AmirebrahimiU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Vivian NgU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.ORCID 0000-0001-8941-6931
Damaris Lorenzo-GutiérrezDepartamento de Genética y Microbiología, Facultad de Biología, Universidad de Murcia, Murcia, Spain.
Ulrike BinderInstitute of Hygiene and Medical Microbiology, Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0002-2160-2903
Junhuan YangCollege of Food Science and Engineering, Lingnan Normal University, Zhanjiang, 524048, China.
Yuanda SongColin Ratledge Center for Microbial Lipids, School of Agricultural Engineering and Food Science, Shandong University of Technology, Zibo, 255049, China.
David CánovasDepartamento de Genética, Facultad de Biología, Universidad de Sevilla, Sevilla, Spain.ORCID 0000-0002-7293-7332
Eusebio NavarroDepartamento de Genética y Microbiología, Facultad de Biología, Universidad de Murcia, Murcia, Spain.ORCID 0000-0002-3091-4378
Michael FreitagDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR, 97331, USA.
Toni GabaldónBarcelona Supercomputing Centre (BSC-CNS), Plaça Eusebi Güell, 1-3, 08034, Barcelona, Spain.ORCID 0000-0003-0019-1735
Igor V GrigorievU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.ORCID 0000-0002-3136-8903
Luis M CorrochanoDepartamento de Genética, Facultad de Biología, Universidad de Sevilla, Sevilla, Spain. corrochano@us.es.ORCID 0000-0002-6282-6567
Francisco E NicolásDepartamento de Genética y Microbiología, Facultad de Biología, Universidad de Murcia, Murcia, Spain. fnicolas@um.es.ORCID 0000-0003-3762-5971
Victoriano GarreDepartamento de Genética y Microbiología, Facultad de Biología, Universidad de Murcia, Murcia, Spain. vgarre@um.es.ORCID 0000-0001-7605-1726

Funding

Fundación Séneca (Fundacion Seneca) 20897/PI/18Fundación Séneca (Fundacion Seneca) 21969/PI/22Junta de Andalucía P20-00622Ministry of Economy and Competitiveness | Agencia Estatal de Investigación (Spanish Agencia Estatal de Investigación) PID2021-124674NB-I00Ministry of Economy and Competitiveness | Agencia Estatal de Investigación (Spanish Agencia Estatal de Investigación) PID2021-128001OB-I00
6 · The paper itself

Abstract

DNA N6-adenine methylation (6mA) has recently gained importance as an epigenetic modification in eukaryotes. Its function in lineages with high levels, such as early-diverging fungi (EDF), is of particular interest. Here, we investigated the biological significance and evolutionary implications of 6mA in EDF, which exhibit divergent evolutionary patterns in 6mA usage. The analysis of two Mucorales species displaying extreme 6mA usage reveals that species with high 6mA levels show symmetric methylation enriched in highly expressed genes. In contrast, species with low 6mA levels show mostly asymmetric 6mA. Interestingly, transcriptomic regulation throughout development and in response to environmental cues is associated with changes in the 6mA landscape. Furthermore, we identify an EDF-specific methyltransferase, likely originated from endosymbiotic bacteria, as responsible for asymmetric methylation, while an MTA-70 methylation complex performs symmetric methylation. The distinct phenotypes observed in the corresponding mutants reinforced the critical role of both types of 6mA in EDF.

Indexed as

AdenineDNA MethylationGene Expression Regulation, FungalMucoralesDNA, FungalEpigenesis, GeneticEvolution, MolecularFungal ProteinsMethyltransferasesMutationPhylogenyAdenineDNA, FungalFungal ProteinsMethyltransferases

Identifiers

PMID39025853
PMCPMC11258239

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.