Evidence map›Paper›PMID 39025801›Full record

ArticleIntegrative and comparative biology2024

Structural and Evolutionary Relationships of Melanin Cascade Proteins in Cnidarian Innate Immunity.

Emily W Van Buren, Ivan E Ponce, Kelsey M Beavers, Alexia Stokes, Mariah N Cornelio, Madison Emery, Laura D Mydlarz

Abstract read
In one paragraph

Article in Integrative and comparative biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Emily W Van BurenDepartment of Biology, University of Texas at Arlington, Arlington, TX 76019, USA.ORCID 0009-0002-0415-5934
Ivan E PonceDepartment of Biology, University of Texas at Arlington, Arlington, TX 76019, USA.
Kelsey M BeaversDepartment of Biology, University of Texas at Arlington, Arlington, TX 76019, USA.ORCID 0000-0003-3366-0366
Alexia StokesDepartment of Biology, University of Texas at Arlington, Arlington, TX 76019, USA.
Mariah N CornelioDepartment of Biology, University of Texas at Arlington, Arlington, TX 76019, USA.
Madison EmeryDepartment of Biology, University of Texas at Arlington, Arlington, TX 76019, USA.
Laura D MydlarzDepartment of Biology, University of Texas at Arlington, Arlington, TX 76019, USA.

Funding

National Science Foundation 1928771
6 · The paper itself

Abstract

Melanin is an essential product that plays an important role in innate immunity in a variety of organisms across the animal kingdom. Melanin synthesis is performed by many organisms using the tyrosine metabolism pathway, a general pathway that utilizes a type-three copper oxidase protein, called PO-candidates (phenoloxidase candidates). While melanin synthesis is well-characterized in organisms like arthropods and humans, it is not as well-understood in non-model organisms such as cnidarians. With the rising anthropomorphic climate change influence on marine ecosystems, cnidarians, specifically corals, are under an increased threat of bleaching and disease. Understanding innate immune pathways, such as melanin synthesis, is vital for gaining insights into how corals may be able to fight these threats. In this study, we use comparative bioinformatic approaches to provide a comprehensive analysis of genes involved in tyrosine-mediated melanin synthesis in cnidarians. Eighteen PO-candidates representing five phyla were studied to identify their evolutionary relationship. Cnidarian species were most similar to chordates due to domain presents in the amino acid sequences. From there, functionally conserved domains in coral proteins were identified in a coral disease dataset. Five stony corals exposed to stony coral tissue loss disease were leveraged to identify 18 putative tyrosine metabolism genes, genes with functionally conserved domains to their Homo sapiens counterpart. To put this pathway in the context of coral health, putative genes were correlated to melanin concentration from tissues of stony coral species in the disease exposure dataset. In this study, tyrosinase was identified in stony corals as correlated to melanin concentrations and likely plays a key role in immunity as a resistance trait. In addition, stony coral genes were assigned to all modules within the tyrosine metabolism pathway, indicating an evolutionary conservation of this pathway across phyla. Overall, this study provides a comprehensive analysis of the genes involved in tyrosine-mediated melanin synthesis in cnidarians.

Indexed as

Immunity, InnateMelaninsAnimalsAnthozoaBiological EvolutionCnidariaEvolution, MolecularMonophenol MonooxygenasePhylogenyMelaninsMonophenol Monooxygenase

Identifiers

PMID39025801
PMCPMC11579526

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.