Evidence map›Paper›PMID 39025067›Full record

ArticleStructure (London, England : 1993)2024

They all rock: A systematic comparison of conformational movements in LeuT-fold transporters.

Jacob A Licht, Samuel P Berry, Michael A Gutierrez, Rachelle Gaudet

Abstract readComparative Study
In one paragraph

Article in Structure (London, England : 1993), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Structure and conformational dynamics of the Pseudomonas CbrA transceptor.Protein science : a publication of the Protein Society · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Determinants of metal import and specificity in a bacterial transporter.bioRxiv : the preprint server for biology · 2026
    Article
  6. Structure and conformational dynamics of thebioRxiv : the preprint server for biology · 2026
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Mechanisms of transport and analgesic compounds recognition by glycine transporter 2.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. A large-scale evolutionary and structural analysis of CLC channels and transporters.Protein science : a publication of the Protein Society · 2025
    Article
  14. Article
  15. Review
  16. Article
  17. Structural basis of auxin binding and transport byProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Jacob A LichtDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.
Samuel P BerryDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.
Michael A GutierrezDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.
Rachelle GaudetDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA. Electronic address: gaudet@mcb.harvard.edu.

Funding

MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008313 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MURTHY, VENKATESH N · 1989 to 2023
$14.6M
Mechanism of Divalent Metal Transport by NRamp-Family TransportersR01GM120996 · NIGMS · HARVARD UNIVERSITY · PI GAUDET, RACHELLE · 2017 to 2024
$3.0M
NIGMS NIH HHS R01 GM120996NIGMS NIH HHS T32 GM008313
6 · The paper itself

Abstract

Many membrane transporters share the LeuT fold-two five-helix repeats inverted across the membrane plane. Despite hundreds of structures, whether distinct conformational mechanisms are supported by the LeuT fold has not been systematically determined. After annotating published LeuT-fold structures, we analyzed distance difference matrices (DDMs) for nine proteins with multiple available conformations. We identified rigid bodies and relative movements of transmembrane helices (TMs) during distinct steps of the transport cycle. In all transporters, the bundle (first two TMs of each repeat) rotates relative to the hash (third and fourth TMs). Motions of the arms (fifth TM) to close or open the intracellular and outer vestibules are common, as is a TM1a swing, with notable variations in the opening-closing motions of the outer vestibule. Our analyses suggest that LeuT-fold transporters layer distinct motions on a common bundle-hash rock and demonstrate that systematic analyses can provide new insights into large structural datasets.

Indexed as

Models, MolecularBacterial ProteinsMembrane Transport ProteinsProtein ConformationProtein FoldingBacterial ProteinsMembrane Transport Proteinsalternating accessamino acid polyamine-organocation superfamilyAPCDDMdistance difference matrixLeuT foldNatural resistance-associated macrophage proteinneurotransmitter-sodium symporterNrampNSSsecondary transporter

Identifiers

PMID39025067
PMCPMC11380583

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.