Evidence map›Paper›PMID 39024095›Full record

ArticleSTAR protocols2024

Protocol for optimizing surface expression and speed in coaggregation assays using K562 cells and subsequent analysis with a CoAg Index.

Adam J Bisogni, Benjamin L Armstead, David M Lin

Abstract read
In one paragraph

Article in STAR protocols, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. On the same side: VISTA and its ligands interact in cis on the cell surface.Protein science : a publication of the Protein Society · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Adam J BisogniDepartment of Biomedical Sciences, Cornell University, Ithaca, NY 14850, USA; Inso Biosciences, 237 Tower Road, Ithaca, NY 14850, USA.
Benjamin L ArmsteadDepartment of Biomedical Sciences, Cornell University, Ithaca, NY 14850, USA.
David M LinDepartment of Biomedical Sciences, Cornell University, Ithaca, NY 14850, USA. Electronic address: dml45@cornell.edu.

Funding

Research and Career Training in Vertebrate Developmental GenomicsT32HD057854 · NICHD · CORNELL UNIVERSITY · PI SCHIMENTI, JOHN C · 2010 to 2020
$1.3M
Protocadherins in vertebrate self recognitionR21DC015107 · NIDCD · CORNELL UNIVERSITY · PI LIN, DAVID M. · 2017 to 2018
$412k
NICHD NIH HHS T32 HD057854NIDCD NIH HHS R21 DC015107
6 · The paper itself

Abstract

Coaggregation assays using K562 cells have been extensively employed to study how cell adhesion molecules mediate specificity between different populations. Here we describe how to prepare K562 cells, optimize electroporation conditions, calibrate antibodies used for protein detection, determine the surface expression of desired adhesion molecules, and considerations for the rotational force to be applied during the assay. We also detail procedures for analyzing coaggregates using our established CoAggregation (CoAg) Index. For complete details on the use and execution of this protocol, please refer to Bisogni et al.

Indexed as

Cell AdhesionCell Adhesion MoleculesElectroporationFlow CytometryHumansK562 CellsCell Adhesion Moleculescell-based assayscell biologycell culture

Identifiers

PMID39024095
PMCPMC11519707

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.