Evidence map›Paper›PMID 39023551›Full record

ArticleCurrent microbiology2024

Genomic Profile of a Multidrug-Resistant Klebsiella pneumoniae Strain Isolated from a Urine Specimen.

Jonathan Arauz-Cabrera, Dolores Marquez-Salazar, Ricardo Delgadillo-Valles, Liliana Caporal-Hernandez, Gerson N Hernandez-Acevedo, Edwin Barrios-Villa

Abstract read
PubMed Publisher
In one paragraph

Article in Current microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jonathan Arauz-CabreraFacultad de Medicina Mexicali, Departamento de Farmacología, Universidad Autónoma de Baja California, Humberto Torres Sanginés SN, Centro Cívico, Mexicali, Baja California, México, CP. 21000.
Dolores Marquez-SalazarFacultad de Medicina Mexicali, Departamento de Farmacología, Universidad Autónoma de Baja California, Humberto Torres Sanginés SN, Centro Cívico, Mexicali, Baja California, México, CP. 21000.
Ricardo Delgadillo-VallesFacultad de Medicina Mexicali, Departamento de Microbiología y Parasitología Clínica, Universidad Autónoma de Baja California, Humberto Torres Sanginés SN, Centro Cívico, Mexicali, Baja California, México, CP. 21000.
Liliana Caporal-HernandezLaboratorio de Biología Molecular y Genómica, Departamento de Ciencias, Químico Biológicas y Agropecuarias, Universidad de Sonora, Universidad e Irigoyen S/N, Campus Caborca. Av., H. Caborca, Sonora, México, CP. 83621.
Gerson N Hernandez-AcevedoFacultad de Medicina Mexicali, Departamento de Microbiología y Parasitología Clínica, Universidad Autónoma de Baja California, Humberto Torres Sanginés SN, Centro Cívico, Mexicali, Baja California, México, CP. 21000.
Edwin Barrios-VillaLaboratorio de Biología Molecular y Genómica, Departamento de Ciencias, Químico Biológicas y Agropecuarias, Universidad de Sonora, Universidad e Irigoyen S/N, Campus Caborca. Av., H. Caborca, Sonora, México, CP. 83621. edwin.barrios@unison.mx.ORCID http://orcid.org/0000-0002-7864-1292

Funding

Consejo Nacional de Ciencia y Tecnología 739111
6 · The paper itself

Abstract

Klebsiella pneumoniae is an opportunistic pathogen mostly found in health care-associated infections but can also be associated with community-acquired infections and is in critical need of new antimicrobial agents for strains resistant to carbapenems. The prevalence of carbapenemase-encoding genes varies among studies. Multidrug-resistant K. pneumoniae strains can harbor several antimicrobial-resistant determinants and mobile genetic elements (MGEs), along with virulence genetic determinants in community settings. We aim to determine the genetic profile of a multidrug-resistant K. pneumoniae strain isolated from a patient with community-acquired UTI. We isolated a K. pneumoniae strain UABC-Str0120, from a urine sample of community-acquired urinary tract infection. Antimicrobial susceptibility tests and Whole-genome sequencing (WGS) were performed. The phylogenetic relationship was inferred by SNPs calling and filtering. UABC-Str0120 showed resistance toward β-lactams, combinations with β-lactamase inhibitors, and carbapenems. WGS revealed the presence of genes conferring resistance to aminoglycosides, β-lactams, carbapenems, quinolones, sulfonamides, phosphonates, phenicols, and quaternary ammonium compounds, 77 subsystems of virulence genes were identified, and an uncommon sequence type ST5889 was also determined. The sequenced strain harbors several MGEs. The UABC-Str0120 recovered from a urine sample harbors several virulence and antimicrobial resistance determinants, which assembles an endangering combination for an immunocompromised or a seemly healthy host, given its presence in a community setting.

Indexed as

Anti-Bacterial AgentsDrug Resistance, Multiple, BacterialGenome, BacterialKlebsiella InfectionsKlebsiella pneumoniaeMicrobial Sensitivity TestsPhylogenyUrinary Tract InfectionsWhole Genome SequencingCommunity-Acquired InfectionsHumansUrineAnti-Bacterial Agents

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.