Evidence map›Paper›PMID 39023264›Full record

ArticleApplied and environmental microbiology2024

Nondestructive and three-dimensional visualization by identifying elements using synchrotron radiation microscale X-ray CT reveals microbial and cavity distributions in anaerobic granular sludge.

Kampachiro Urasaki, Yuki Morono, Go-Ichiro Uramoto, Kentaro Uesugi, Masahiro Yasutake, Manato Akishiba, Guangze Guo, Yu-You Li, Kengo Kubota

Abstract read
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In one paragraph

Article in Applied and environmental microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kampachiro UrasakiDepartment of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, Sendai, Miyagi, Japan.ORCID 0009-0008-4389-758X
Yuki MoronoGeomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Nankoku, Kochi, Japan.ORCID 0000-0001-8928-4254
Go-Ichiro UramotoMarine Core Research Institute, Kochi University, Nankoku, Kochi, Japan.
Kentaro UesugiJapan Synchrotron Radiation Research Institute, Sayo, Hyogo, Japan.
Masahiro YasutakeJapan Synchrotron Radiation Research Institute, Sayo, Hyogo, Japan.
Manato AkishibaGraduate School of Integrated Arts and Sciences, Kochi University, Nankoku, Kochi, Japan.
Guangze GuoDepartment of Frontier Sciences for Advanced Environment, Graduate School of Environmental Studies, Tohoku University, Sendai, Miyagi, Japan.
Yu-You LiDepartment of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, Sendai, Miyagi, Japan.
Kengo KubotaDepartment of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, Sendai, Miyagi, Japan.ORCID 0000-0002-1913-272X

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) JP22K18818,JP23H00154,JP20K20952,JP19H00730,JP20H04308,JP21J21027
6 · The paper itself

Abstract

We developed a nondestructive three-dimensional microbial visualization method utilizing synchrotron radiation X-ray microscale computed tomography to better understand the relationship between microorganisms and their surrounding habitats. The method was tested and optimized using a mixture of axenic IMPORTANCE: Microorganisms inhabit diverse environments and often form biofilms. One factor that affects their community structure is the surrounding physical environment. The arrangement of residential space within the formed biofilm plays a crucial role in the supply and transportation of substances, as well as the discharge of metabolites. Conventional approaches, such as scanning electron microscopy and confocal laser scanning microscopy combined with fluorescence in

Indexed as

SewageSynchrotronsAnaerobiosisEscherichia coliImaging, Three-DimensionalX-Ray MicrotomographySewageanaerobic granular sludgecavityL3-edge energy subtractionSPring-8synchrotron radiation X-ray computer tomography

Identifiers

PMID39023264
PMCPMC11337819

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.