Evidence map›Paper›PMID 39023127›Full record

ArticleCarcinogenesis2024

The interplay of DNA damage and repair, gene expression, and mutagenesis in mammalian cells during oxidative stress.

Ahmad Besaratinia, Andrew W Caliri, Stella Tommasi

Abstract read
In one paragraph

Article in Carcinogenesis, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ahmad BesaratiniaDepartment of Population & Public Health Sciences, USC Keck School of Medicine, University of Southern California, M/C 9603, Los Angeles, CA 90033, United States.ORCID 0000-0001-7231-228X
Andrew W CaliriDepartment of Population & Public Health Sciences, USC Keck School of Medicine, University of Southern California, M/C 9603, Los Angeles, CA 90033, United States.
Stella TommasiDepartment of Population & Public Health Sciences, USC Keck School of Medicine, University of Southern California, M/C 9603, Los Angeles, CA 90033, United States.

Funding

Differentiating the biological effects of vaping from smoking by analyzing the methylome and transcriptomeR01DE031863 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI AHMAD BESARATINIA · 2023 to 2026
$1.6M
Network-based analysis of disease-associated epigenetic changes in youth electronic cigarette usersR21DA058342 · NIDA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BESARATINIA, AHMAD · 2023 to 2024
$456k
Development of biomarkers of exposure and effects for electronic cigarette vs. combustible cigarette useR21CA268197 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BESARATINIA, AHMAD · 2021 to 2022
$454k
OPIOID RECEPTOR/POTASSIUM ION CHANNEL COMPLEXF31DA005834 · NIDA · UNIVERSITY OF CINCINNATI · PI LAU, JOAN M · 1998 to 2001
$36k
NCI NIH HHS R21 CA268197NIDA NIH HHS F31 DA005834NIDA NIH HHS R21 DA058342NIDCR NIH HHS R01 DE031863NIH HHS R01DE031863University of California Tobacco-Related Disease Research Program T31IR1839
6 · The paper itself

Abstract

We investigated the interplay among oxidative DNA damage and repair, expression of genes encoding major base excision repair (BER) enzymes and bypass DNA polymerases, and mutagenesis in mammalian cells. Primary mouse embryonic fibroblasts were challenged with oxidative stress induced by methylene blue plus visible light, and formation and repair of DNA damage, changes in gene expression, and mutagenesis were determined at increasing intervals posttreatment (0-192 hours). Significant formation of oxidative DNA damage together with upregulation of Ogg1, Polβ, and Polκ, and no changes in Mutyh and Nudt1 expression were found in treated cells. There was a distinct interconnection between Ogg1 and Polβ expression and DNA damage formation and repair whereby changes in expression of these two genes were proportionate to the levels of oxidative DNA damage, once a 3-plus hour lag time passed (P < .05). Equally notable was the matching pattern of Polκ expression and kinetics of oxidative DNA damage and repair (P < .05). The DNA damage and gene expression data were remarkably consistent with mutagenicity data in the treated cells; the induced mutation spectrum is indicative of erroneous bypass of oxidized DNA bases and incorporation of oxidized deoxynucleoside triphosphates during replication of the genomic DNA. Our findings support follow-up functional studies to elucidate how oxidation of DNA bases and the nucleotide pool, overexpression of Polκ, delayed upregulation of Ogg1 and Polβ, and inadequate expression of Nudt1 and Mutyh collectively affect mutagenesis consequent to oxidative stress.

Indexed as

DNA DamageDNA GlycosylasesDNA Polymerase betaDNA RepairFibroblastsMutagenesisOxidative StressAnimalsCells, CulturedMicePhosphoric Monoester HydrolasesPyrophosphatasesDNA GlycosylasesDNA Polymerase betamutY adenine glycosylaseNudt1 protein, mouseOgg1 protein, mousePhosphoric Monoester HydrolasesPyrophosphatases8-oxodGbase excision repairdinucleotide poolDNA polymerasereactive oxygen species

Identifiers

PMID39023127
PMCPMC11584291

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.