Evidence map›Paper›PMID 39021337›Full record

ArticleNucleic acids research2024

DNA cytosine methyltransferases differentially regulate genome-wide hypermutation and interhomolog recombination in Trichoderma reesei meiosis.

Lavernchy Jovanska, I-Chen Lin, Jhong-Syuan Yao, Chia-Ling Chen, Hou-Cheng Liu, Wan-Chen Li, Yu-Chien Chuang, Chi-Ning Chuang, Albert Chen-Hsin Yu, Hsin-Nan Lin and 9 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Lavernchy JovanskaInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
I-Chen LinInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Jhong-Syuan YaoInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Chia-Ling ChenInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Hou-Cheng LiuInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Wan-Chen LiInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Yu-Chien ChuangInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Chi-Ning ChuangInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Albert Chen-Hsin YuInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.ORCID 0000-0002-5662-3026
Hsin-Nan LinInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Wen-Li PongInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Chang-I YuInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Ching-Yuan SuInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Yi-Ping ChenInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Ruey-Shyang ChenDepartment of Biochemical Science and Technology, National Chiayi University, Chiayi, Taiwan.
Yi-Ping HsuehInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.ORCID 0000-0002-0866-6275
Hanna S YuanInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.ORCID 0000-0001-9671-6967
Ljudmilla TimofejevaInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Ting-Fang WangInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.ORCID 0000-0001-6306-9505

Funding

Academia SinicaInstitute of Molecular Biology, Academia Sinica, Taiwan, Republic of ChinaNational Science and Technology Council NSTC 111-2311-B-001-MY3
6 · The paper itself

Abstract

Trichoderma reesei is an economically important enzyme producer with several unique meiotic features. spo11, the initiator of meiotic double-strand breaks (DSBs) in most sexual eukaryotes, is dispensable for T. reesei meiosis. T. reesei lacks the meiosis-specific recombinase Dmc1. Rad51 and Sae2, the activator of the Mre11 endonuclease complex, promote DSB repair and chromosome synapsis in wild-type and spo11Δ meiosis. DNA methyltransferases (DNMTs) perform multiple tasks in meiosis. Three DNMT genes (rid1, dim2 and dimX) differentially regulate genome-wide cytosine methylation and C:G-to-T:A hypermutations in different chromosomal regions. We have identified two types of DSBs: type I DSBs require spo11 or rid1 for initiation, whereas type II DSBs do not rely on spo11 and rid1 for initiation. rid1 (but not dim2) is essential for Rad51-mediated DSB repair and normal meiosis. rid1 and rad51 exhibit a locus heterogeneity (LH) relationship, in which LH-associated proteins often regulate interconnectivity in protein interaction networks. This LH relationship can be suppressed by deleting dim2 in a haploid rid1Δ (but not rad51Δ) parental strain, indicating that dim2 and rid1 share a redundant function that acts earlier than rad51 during early meiosis. In conclusion, our studies provide the first evidence of the involvement of DNMTs during meiotic initiation and recombination.

Indexed as

DNA Breaks, Double-StrandedHypocrealesMeiosisDNA (Cytosine-5-)-MethyltransferasesDNA MethylationEndodeoxyribonucleasesFungal ProteinsGenome, FungalHomologous RecombinationMeiotic Recombination Protein SPO11DNA (Cytosine-5-)-MethyltransferasesEndodeoxyribonucleasesFungal ProteinsMeiotic Recombination Protein SPO11

Identifiers

PMID39021337
PMCPMC11381340

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.