Evidence map›Paper›PMID 39019939›Full record

ArticleScientific reports2024

BioPipeline Creator-a user-friendly Java-based GUI for managing and customizing biological data pipelines.

Cléo Maia Cordeiro, Gislenne da Silva Moia, Mônica Silva de Oliveira, Lucas da Silva E Silva, Maria Paula Cruz Schneider, Sávio S Costa, Rafael Azevedo Baraúna, Diego Assis das Graças, Artur Silva, Adonney Allan de Oliveira Veras

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In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Cléo Maia CordeiroFaculty of Computing, Federal University of Pará campus Castanhal, Pará, Brazil.
Gislenne da Silva MoiaPostgraduate Program in Applied Computing, Federal University of Pará campus Tucuruí Pará, Tucuruí, Brazil.
Mônica Silva de OliveiraFederal Institute of Pará campus Tucuruí, Pará, Brazil.
Lucas da Silva E SilvaCenter of Genomics and System Biologics, Federal University of Pará, Belém, Pará, Brazil.
Maria Paula Cruz SchneiderCenter of Genomics and System Biologics, Federal University of Pará, Belém, Pará, Brazil.
Sávio S CostaBiological Engineering Laboratory, Guamá Science and Technology Park, Belém, Pará, Brazil.
Rafael Azevedo BaraúnaBiological Engineering Laboratory, Guamá Science and Technology Park, Belém, Pará, Brazil.
Diego Assis das GraçasBiological Engineering Laboratory, Guamá Science and Technology Park, Belém, Pará, Brazil.
Artur SilvaBiological Engineering Laboratory, Guamá Science and Technology Park, Belém, Pará, Brazil.
Adonney Allan de Oliveira VerasBiological Engineering Laboratory, Guamá Science and Technology Park, Belém, Pará, Brazil. allanveras@ufpa.br.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bioinformatics tools are essential for performing analyses in the omics sciences. Given the numerous experimental opportunities arising from advances in the field of omics and easier access to high-throughput sequencing platforms, these tools play a fundamental role in research projects. Despite the considerable progress made possible by the development of bioinformatics tools, some tools are tailored to specific analytical goals, leading to challenges for non-bioinformaticians who need to integrate the results of these specific tools into a customized pipeline. To solve this problem, we have developed the BioPipeline Creator, a user-friendly Java-based GUI that allows different software tools to be integrated into the repertoire while ensuring easy user interaction via an accessible graphical interface. Consisting of client and server software components, BioPipeline Creator provides an intuitive graphical interface that simplifies the use of various bioinformatics tools for users without advanced computer skills. It can run on less sophisticated devices or workstations, allowing users to keep their operating system without having to switch to another compatible system. The server is responsible for the processing tasks and can perform the analysis in the user's local or remote network structure. Compatible with the most important operating systems, available at https://github.com/allanverasce/bpc.git .

Indexed as

Computational BiologySoftwareUser-Computer InterfaceHigh-Throughput Nucleotide SequencingHumansProgramming LanguagesBioinformaticsCustomized pipelineResearch reproducibility

Identifiers

PMID39019939
PMCPMC11255246

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.