Evidence map›Paper›PMID 39019926›Full record

ArticleNature communications2024

DHX9 SUMOylation is required for the suppression of R-loop-associated genome instability.

Bing-Ze Yang, Mei-Yin Liu, Kuan-Lin Chiu, Yuh-Ling Chien, Ching-An Cheng, Yu-Lin Chen, Li-Yu Tsui, Keng-Ru Lin, Hsueh-Ping Catherine Chu, Ching-Shyi Peter Wu

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Bing-Ze Yang *Department and Graduate Institute of Pharmacology, College of Medicine, National Taiwan University, Taipei, 100233, Taiwan.
Mei-Yin Liu *Department and Graduate Institute of Pharmacology, College of Medicine, National Taiwan University, Taipei, 100233, Taiwan.
Kuan-Lin ChiuInstitute of Molecular and Cellular Biology, National Taiwan University, Taipei, 106319, Taiwan.
Yuh-Ling ChienDepartment and Graduate Institute of Pharmacology, College of Medicine, National Taiwan University, Taipei, 100233, Taiwan.
Ching-An ChengDepartment and Graduate Institute of Pharmacology, College of Medicine, National Taiwan University, Taipei, 100233, Taiwan.
Yu-Lin ChenDepartment and Graduate Institute of Pharmacology, College of Medicine, National Taiwan University, Taipei, 100233, Taiwan.
Li-Yu TsuiDepartment and Graduate Institute of Pharmacology, College of Medicine, National Taiwan University, Taipei, 100233, Taiwan.
Keng-Ru LinDepartment and Graduate Institute of Pharmacology, College of Medicine, National Taiwan University, Taipei, 100233, Taiwan.
Hsueh-Ping Catherine ChuInstitute of Molecular and Cellular Biology, National Taiwan University, Taipei, 106319, Taiwan.ORCID 0000-0002-0281-0942
Ching-Shyi Peter WuDepartment and Graduate Institute of Pharmacology, College of Medicine, National Taiwan University, Taipei, 100233, Taiwan. cswu2017@ntu.edu.tw.ORCID 0000-0001-9800-9844

Funding

National Taiwan University (NTU) CDP-111L7737, 112L7720, and 113L7704
6 · The paper itself

Abstract

RNA helicase DHX9 is essential for genome stability by resolving aberrant R-loops. However, its regulatory mechanisms remain unclear. Here we show that SUMOylation at lysine 120 (K120) is crucial for DHX9 function. Preventing SUMOylation at K120 leads to R-loop dysregulation, increased DNA damage, and cell death. Cells expressing DHX9 K120R mutant which cannot be SUMOylated are more sensitive to genotoxic agents and this sensitivity is mitigated by RNase H overexpression. Unlike the mutant, wild-type DHX9 interacts with R-loop-associated proteins such as PARP1 and DDX21 via SUMO-interacting motifs. Fusion of SUMO2 to the DHX9 K120R mutant enhances its association with these proteins, reduces R-loop accumulation, and alleviates survival defects of DHX9 K120R. Our findings highlight the critical role of DHX9 SUMOylation in maintaining genome stability by regulating protein interactions necessary for R-loop balance.

Indexed as

DEAD-box RNA HelicasesGenomic InstabilityR-Loop StructuresSumoylationDNA DamageHEK293 CellsHumansLysineMutationNeoplasm ProteinsPoly (ADP-Ribose) Polymerase-1Small Ubiquitin-Related Modifier ProteinsDDX21 protein, humanDEAD-box RNA HelicasesDHX9 protein, humanLysineNeoplasm ProteinsPARP1 protein, humanPoly (ADP-Ribose) Polymerase-1Small Ubiquitin-Related Modifier ProteinsSUMO2 protein, human

Identifiers

PMID39019926
PMCPMC11255299

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.