Evidence map›Paper›PMID 39019843›Full record

ArticleThe Journal of eukaryotic microbiology

Morphology, behavior, and phylogenomics of Oxytoxum lohmannii, Dinoflagellata.

Elizabeth C Cooney, Dean M Jacobson, Gordon V Wolfe, Kelley J Bright, Juan F Saldarriaga, Patrick J Keeling, Brian S Leander, Suzanne L Strom

Abstract read
In one paragraph

Article in The Journal of eukaryotic microbiology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Elizabeth C CooneyDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada.ORCID https://orcid.org/0000-0001-7435-7609
Dean M JacobsonCollege of the Marshall Islands, Majuro, Marshall Islands.
Gordon V WolfeDepartment of Biological Sciences, California State University, Chico, Chico, California, USA.
Kelley J BrightShannon Point Marine Center, Western Washington University, Anacortes, USA.
Juan F SaldarriagaDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada.
Patrick J KeelingDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada.
Brian S LeanderDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada.ORCID https://orcid.org/0000-0003-0798-0470
Suzanne L StromShannon Point Marine Center, Western Washington University, Anacortes, USA.

Funding

Gordon and Betty Moore Foundation https://doi.org/10.37807/GBMF9201National Science Foundation OCE-9730952Natural Sciences and Engineering Research Council of Canada NSERC 2019-03986Natural Sciences and Engineering Research Council of Canada NSERC 2019-03994
6 · The paper itself

Abstract

Dinoflagellates are an abundant and diverse group of protists representing a wealth of unique biology and ecology. While many dinoflagellates are photosynthetic or mixotrophic, many taxa are heterotrophs, often with complex feeding strategies. Compared to their photosynthetic counterparts, heterotrophic dinoflagellates remain understudied, as they are difficult to culture. One exception, a long-cultured isolate originally classified as Amphidinium but recently reclassified as Oxytoxum, has been the subject of a number of feeding, growth, and chemosensory studies. This lineage was recently determined to be closely related to Prorocentrum using phylogenetics of ribosomal RNA gene sequences, but the exact nature of this relationship remains unresolved. Using transcriptomes sequenced from culture and three single cells from the environment, we produce a robust phylogeny of 242 genes, revealing Oxytoxum is likely sister to the Prorocentrum clade, rather than nested within it. Molecular investigations uncover evidence of a reduced, nonphotosynthetic plastid and proteorhodopsin, a photoactive proton pump acquired horizontally from bacteria. We describe the ultrastructure of O. lohmannii, including densely packed trichocysts, and a new type of mucocyst. We observe that O. lohmannii feeds preferentially on cryptophytes using myzocytosis, but can also feed on various phytoflagellates using conventional phagocytosis. O. lohmannii is amenable to culture, providing an opportunity to better study heterotrophic dinoflagellate biology and feeding ecology.

Indexed as

DinoflagellidaPhylogenyHeterotrophic ProcessesTranscriptomedinoflagellategrazingnonphotosynthetic plastidpeduncle feedingphylogenomicsproteorhodopsin

Identifiers

PMID39019843
PMCPMC11603288

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.