Evidence map›Paper›PMID 39019219›Full record

ReviewMolecules and cells2024

Unlocking biological mechanisms with integrative functional genomics approaches.

Sehee Yun, Minsoo Noh, Jivin Yu, Hyeon-Jai Kim, Chi-Chung Hui, Hunsang Lee, Joe Eun Son

Abstract readReview
In one paragraph

Review in Molecules and cells, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sehee YunDepartment of Life Sciences, Korea University, Seoul 02841, Korea.
Minsoo NohDepartment of Life Sciences, Korea University, Seoul 02841, Korea; Department of Internal Medicine and Laboratory of Genomics and Translational Medicine, Gachon University College of Medicine, Incheon 21565, Korea.
Jivin YuDepartment of Life Sciences, Korea University, Seoul 02841, Korea.
Hyeon-Jai KimDepartment of Life Sciences, Korea University, Seoul 02841, Korea.
Chi-Chung HuiProgram in Developmental and Stem Cell Biology, The Hospital for Sick Children, Toronto, ON, Canada; Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada.
Hunsang LeeDepartment of Life Sciences, Korea University, Seoul 02841, Korea. Electronic address: hunsang@korea.ac.kr.
Joe Eun SonSchool of Food Science and Biotechnology, Kyungpook National University, Daegu 41566, Korea. Electronic address: joeson@knu.ac.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reverse genetics offers precise functional insights into genes through the targeted manipulation of gene expression followed by phenotypic assessment. While these approaches have proven effective in model organisms such as Saccharomyces cerevisiae, large-scale genetic manipulations in human cells were historically unfeasible due to methodological limitations. However, recent advancements in functional genomics, particularly clustered regularly interspaced short palindromic repeats (CRISPR)-based screening technologies and next-generation sequencing platforms, have enabled pooled screening technologies that allow massively parallel, unbiased assessments of biological phenomena in human cells. This review provides a comprehensive overview of cutting-edge functional genomic screening technologies applicable to human cells, ranging from short hairpin RNA screens to modern CRISPR screens. Additionally, we explore the integration of CRISPR platforms with single-cell approaches to monitor gene expression, chromatin accessibility, epigenetic regulation, and chromatin architecture following genetic perturbations at the omics level. By offering an in-depth understanding of these genomic screening methods, this review aims to provide insights into more targeted and effective strategies for genomic research and personalized medicine.

Indexed as

GenomicsChromatinCRISPR-Cas SystemsEpigenesis, GeneticHigh-Throughput Nucleotide SequencingHumansChromatinClustered regularly interspaced short palindromic repeats screeningFunctional genomicsGenome-wide screeningReverse geneticsSingle-cell genomicsSystems biology

Identifiers

PMID39019219
PMCPMC11345568

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.