Evidence map›Paper›PMID 39018367›Full record

ArticleScience translational medicine2024

Comparative single-cell analysis reveals IFN-γ as a driver of respiratory sequelae after acute COVID-19.

Chaofan Li, Wei Qian, Xiaoqin Wei, Harish Narasimhan, Yue Wu, Mohd Arish, In Su Cheon, Jinyi Tang, Gislane de Almeida Santos, Ying Li and 4 more

Abstract readComparative Study
In one paragraph

Article in Science translational medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Trial
  2. Monocytes in pneumonia: Functional plasticity and innate memory (Review).International journal of molecular medicine · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Magnesium and gender in long COVID.Journal of translational medicine · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Host Responses to SARS-CoV-2 with an Emphasis on Cytokines.International journal of molecular sciences · 2026
    Review
  15. The Central Role of Macrophages in Long COVID Pathophysiology.International journal of molecular sciences · 2025
    Review
  16. Article
  17. Article
  18. Article
  19. Scar wars: the viral menace.American journal of physiology. Lung cellular and molecular physiology · 2025
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Chaofan LiBeirne B. Carter Center for Immunology Research, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0000-0002-5426-1498
Wei QianBeirne B. Carter Center for Immunology Research, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0009-0000-3843-6510
Xiaoqin WeiBeirne B. Carter Center for Immunology Research, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0000-0001-6210-7899
Harish NarasimhanBeirne B. Carter Center for Immunology Research, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0000-0002-3376-8257
Yue WuBeirne B. Carter Center for Immunology Research, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0000-0003-3667-2960
Mohd ArishBeirne B. Carter Center for Immunology Research, University of Virginia, Charlottesville, VA 22908, USA.
In Su CheonBeirne B. Carter Center for Immunology Research, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0000-0001-5160-7783
Jinyi TangBeirne B. Carter Center for Immunology Research, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0000-0003-3593-4324
Gislane de Almeida SantosBeirne B. Carter Center for Immunology Research, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0000-0002-9605-2061
Ying LiDepartment of Quantitative Health Sciences, Mayo Clinic, Jacksonville, FL 32224, USA.
Kamyar SharifiBeirne B. Carter Center for Immunology Research, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0000-0001-7263-326X
Ryan KernDivision of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA.ORCID 0000-0002-6311-2881
Robert VassalloDivision of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA.ORCID 0000-0003-2328-0255
Jie SunBeirne B. Carter Center for Immunology Research, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0000-0002-2347-4511

Funding

INTERDISCIPLINARY TRAINING PROGRAM IN IMMUNOLOGYT32AI007496 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Michael G. Brown, Coleen A McNamara · 1995 to 2026
$10.2M
Host cellular network governing the development of post SARS-CoV-2 tissue sequelaeR01AI147394 · NIAID · UNIVERSITY OF VIRGINIA · PI Jie Sun · 2020 to 2026
$4.7M
Molecular regulation of protective CD8 immunity against influenza infectionR01AI112844 · NIAID · UNIVERSITY OF VIRGINIA · PI SUN, JIE · 2015 to 2024
$4.5M
Elucidating the roles of alveolar macrophage inflammation and selfrenewal during influenza infectionR01AG069264 · NIA · UNIVERSITY OF VIRGINIA · PI Jie Sun · 2020 to 2026
$3.5M
Roles of tissue-resident helper T cells in mucosal immunity against influenzainfectionR01AI154598 · NIAID · UNIVERSITY OF VIRGINIA · PI SUN, JIE · 2020 to 2024
$2.9M
Determinants of Convalescent and Vaccine-induced Mucosal Specific Immunity to SARS-CoV-2 and Variants of Concern in Children with AsthmaR01AI176171 · NIAID · UNIVERSITY OF VIRGINIA · PI Jie Sun, WILLIAM GERALD TEAGUE · 2023 to 2026
$2.7M
Uncover mechanisms underlying the development of chronic lung sequelae post COVID-19R01HL170961 · NHLBI · UNIVERSITY OF VIRGINIA · PI Jie Sun, ROBERT VASSALLO · 2023 to 2026
$2.7M
Simultaneously boosting both humoral and cellular immunity following vaccinationR01AG047156 · NIA · MAYO CLINIC ROCHESTER · PI SUN, JIE · 2015 to 2019
$1.6M
Psychological and inflammatory biobehavioral mechanisms underlying the association between bereavement and cardiovascular diseaseF31HL147394 · NHLBI · RICE UNIVERSITY · PI SHAHANE, ANOUSHKA D. · 2019 to 2021
$106k
Immune-epithelial progenitor interactions drive age-associated dysplastic lung repair post viral pneumoniaF31HL170746 · NHLBI · UNIVERSITY OF VIRGINIA · PI NARASIMHAN, HARISH · 2023 to 2024
$86k
Lung resident macrophage subsets in regulating tissue immunity - Resubmission - 1F32HL154598 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DAMANI-YOKOTA, PAYAL · 2021 to 2022
$85k
NHLBI NIH HHS F31 HL147394NHLBI NIH HHS F31 HL170746NHLBI NIH HHS F32 HL154598NHLBI NIH HHS R01 HL170961NIAID NIH HHS R01 AI112844NIAID NIH HHS R01 AI147394NIAID NIH HHS R01 AI154598NIAID NIH HHS R01 AI176171NIAID NIH HHS T32 AI007496NIA NIH HHS R01 AG047156NIA NIH HHS R01 AG069264
6 · The paper itself

Abstract

Postacute sequelae of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection (PASC) represent an urgent public health challenge and are estimated to affect more than 60 million individuals globally. Although a growing body of evidence suggests that dysregulated immune reactions may be linked with PASC symptoms, most investigations have primarily centered around blood-based studies, with few focusing on samples derived from affected tissues. Furthermore, clinical studies alone often provide correlative insights rather than causal mechanisms. Thus, it is essential to compare clinical samples with relevant animal models and conduct functional experiments to understand the etiology of PASC. In this study, we comprehensively compared bronchoalveolar lavage fluid single-cell RNA sequencing data derived from clinical PASC samples and a mouse model of PASC. This revealed a pro-fibrotic monocyte-derived macrophage response in respiratory PASC, as well as abnormal interactions between pulmonary macrophages and respiratory resident T cells, in both humans and mice. Interferon-γ (IFN-γ) emerged as a key node mediating the immune anomalies in respiratory PASC. Neutralizing IFN-γ after the resolution of acute SARS-CoV-2 infection reduced lung inflammation and tissue fibrosis in mice. Together, our study underscores the importance of performing comparative analysis to understand the cause of PASC and suggests that the IFN-γ signaling axis might represent a therapeutic target.

Indexed as

Bronchoalveolar Lavage FluidCOVID-19Interferon-gammaSARS-CoV-2Single-Cell AnalysisAnimalsDisease Models, AnimalFemaleHumansLungMacrophages, AlveolarMaleMiceMice, Inbred C57BLT-LymphocytesIFNG protein, humanIFNG protein, mouseInterferon-gamma

Identifiers

PMID39018367
PMCPMC12757174

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.