Evidence map›Paper›PMID 39018334›Full record

ArticlePLoS computational biology2024

Convergence, sampling and total order estimator effects on parameter orthogonality in global sensitivity analysis.

Harry Saxton, Xu Xu, Torsten Schenkel, Richard H Clayton, Ian Halliday

Abstract read
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Article in PLoS computational biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Harry SaxtonMaterials & Engineering Research Institute, Sheffield Hallam University, Sheffield, United Kingdom.ORCID 0000-0001-7433-6154
Xu XuDepartment of Computer Science, Faculty of Engineering, University of Sheffield, Sheffield, United Kingdom.ORCID 0000-0002-9721-9054
Torsten SchenkelDepartment of Engineering and Mathematics, Sheffield Hallam University, Sheffield, United Kingdom.ORCID 0000-0001-5560-1872
Richard H ClaytonDepartment of Computer Science, Faculty of Engineering, University of Sheffield, Sheffield, United Kingdom.ORCID 0000-0002-8438-7518
Ian HallidayInsigneo Institute for in silico Medicine, University of Sheffield, Sheffield, United Kingdom.

Funding

Sheffield Hallam University Graduate Teaching Assistant PhD scholarship
6 · The paper itself

Abstract

Dynamical system models typically involve numerous input parameters whose "effects" and orthogonality need to be quantified through sensitivity analysis, to identify inputs contributing the greatest uncertainty. Whilst prior art has compared total-order estimators' role in recovering "true" effects, assessing their ability to recover robust parameter orthogonality for use in identifiability metrics has not been investigated. In this paper, we perform: (i) an assessment using a different class of numerical models representing the cardiovascular system, (ii) a wider evaluation of sampling methodologies and their interactions with estimators, (iii) an investigation of the consequences of permuting estimators and sampling methodologies on input parameter orthogonality, (iv) a study of sample convergence through resampling, and (v) an assessment of whether positive outcomes are sustained when model input dimensionality increases. Our results indicate that Jansen or Janon estimators display efficient convergence with minimum uncertainty when coupled with Sobol and the lattice rule sampling methods, making them prime choices for calculating parameter orthogonality and influence. This study reveals that global sensitivity analysis is convergence driven. Unconverged indices are subject to error and therefore the true influence or orthogonality of the input parameters are not recovered. This investigation importantly clarifies the interactions of the estimator and the sampling methodology by reducing the associated ambiguities, defining novel practices for modelling in the life sciences.

Indexed as

Computer SimulationAlgorithmsComputational BiologyHumansModels, BiologicalModels, CardiovascularModels, StatisticalUncertainty

Identifiers

PMID39018334
PMCPMC11285933

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.