Evidence map›Paper›PMID 39017886›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Epigenomic Profiling of B Cell Subsets by CUT&Tag.

Bagdeser Akdogan-Ozdilek, Lou-Ella M M George-Alexander, Christopher D Scharer

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Bagdeser Akdogan-OzdilekDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.
Lou-Ella M M George-AlexanderDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.
Christopher D ScharerDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA. cdschar@emory.edu.

Funding

Regulation of Pathogenic Plasma Cells in Human SLEP01AI125180 · NIAID · EMORY UNIVERSITY · PI Ignacio E. Sanz · 2016 to 2026
$28.2M
Epigenetic instruction of memory B cell function and reactivationR01AI148471 · NIAID · EMORY UNIVERSITY · PI SCHARER, CHRISTOPHER D · 2020 to 2024
$1.9M
NIAID NIH HHS P01 AI125180NIAID NIH HHS R01 AI148471
6 · The paper itself

Abstract

Epigenetic programs play a key role in regulating the development and function of immune cells. However, conventional methods for profiling epigenetic mechanisms, such as the post-translational modifications to histones, present several technical challenges that prevent a complete understanding of gene regulation. Here, we provide a detailed protocol of the Cleavage Under Targets and Tagmentation (CUT&Tag) chromatin profiling technique for identifying histone modifications in human and mouse lymphocytes.

Indexed as

B-Lymphocyte SubsetsEpigenesis, GeneticEpigenomicsHistonesAnimalsChromatinHistone CodeHumansMiceProtein Processing, Post-TranslationalChromatinHistonesChIPChromatinCUT&TagEpigeneticGene regulationHistone modificationsLymphocytesTn5

Identifiers

PMID39017886
PMCPMC11753148

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.