Evidence map›Paper›PMID 39016685›Full record

ArticleJournal of cell science2024

Chemical genetic screens reveal defective lysosomal trafficking as synthetic lethal with NF1 loss.

Stephanie J Bouley, Andrew V Grassetti, Robert J Allaway, Matthew D Wood, Helen W Hou, India R Burdon Dasbach, William Seibel, Jimmy Wu, Scott A Gerber, Konstantin H Dragnev and 2 more

Abstract read
In one paragraph

Article in Journal of cell science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Stephanie J BouleyDepartment of Molecular and Systems Biology, Geisel School of Medicine, Hanover, NH 03755, USA.ORCID 0000-0003-0785-0860
Andrew V GrassettiDepartment of Molecular and Systems Biology, Geisel School of Medicine, Hanover, NH 03755, USA.
Robert J AllawayDepartment of Molecular and Systems Biology, Geisel School of Medicine, Hanover, NH 03755, USA.ORCID 0000-0003-3573-3565
Matthew D WoodDepartment of Pharmacology and Toxicology, Geisel School of Medicine, Hanover, NH 03755, USA.
Helen W HouDepartment of Pharmacology and Toxicology, Geisel School of Medicine, Hanover, NH 03755, USA.
India R Burdon DasbachDepartment of Molecular and Systems Biology, Geisel School of Medicine, Hanover, NH 03755, USA.ORCID 0000-0001-7657-1545
William SeibelCincinnati Children's Hospital, University of Cincinnati, Cincinnati, OH 45229, USA.ORCID 0000-0003-1401-8618
Jimmy WuDepartment of Chemistry, Dartmouth College, Hanover, NH 03755, USA.ORCID 0000-0002-0938-8019
Scott A GerberDepartment of Molecular and Systems Biology, Geisel School of Medicine, Hanover, NH 03755, USA.ORCID 0000-0002-2964-5051
Konstantin H DragnevDepartment of Medicine, Geisel School of Medicine, Hanover, NH 03755, USA.ORCID 0000-0001-8277-6993
James A WalkerCenter for Genomic Medicine, Massachusetts General Hospital, Boston, MA 02114, USA.ORCID 0000-0001-5585-698X
Yolanda SanchezDepartment of Molecular and Systems Biology, Geisel School of Medicine, Hanover, NH 03755, USA.

Funding

Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Fred W Kolling IV · 1985 to 2026
$91.3M
Understanding the role of RNA-binding protein mutations in cancerP20GM113132 · NIGMS · DARTMOUTH COLLEGE · PI MIERKE, DALE F · 2016 to 2025
$25.9M
Partners Healthcare Training Program in Precision and Genomic MedicineT32HG010464 · NHGRI · MASSACHUSETTS GENERAL HOSPITAL · PI HEIDI L REHM, JORDAN W SMOLLER · 2019 to 2026
$3.1M
Targeting Tumors with NF1 LossR01NS095411 · NINDS · DARTMOUTH COLLEGE · PI HOOPES, JACK, RATNER, NANCY · 2015 to 2019
$2.7M
Phosphorylation signaling in cell divisionR35GM145596 · NIGMS · DARTMOUTH COLLEGE · PI Scott A. Gerber · 2022 to 2026
$2.0M
Defining human kinase-substrate networks and their dynamic regulationR01GM122846 · NIGMS · DARTMOUTH COLLEGE · PI GERBER, SCOTT A. · 2017 to 2020
$1.5M
LC-Orbitrap MS/MS System for shotgun Proteomics at DartmouthS10OD016212 · OD · DARTMOUTH COLLEGE · PI GERBER, SCOTT A. · 2013 to 2013
$600k
Identification of Drug Targets for NF1R21NS060940 · NINDS · DARTMOUTH COLLEGE · PI SANCHEZ, YOLANDA · 2009 to 2010
$388k
Children's Tumor FoundationCongressionally Directed Medical Research ProgramsDepartment of Defense W81XWH-16-1-0220Friends of the Norris Cotton Cancer CenterNancy P. Shea TrustNCI NIH HHS P30 CA023108Neurofibromatosis Therapeutic Acceleration ProgramNHGRI NIH HHS T32 HG010464NIGMS NIH HHS P20 GM113132NIGMS NIH HHS R01 GM122846NIGMS NIH HHS R35 GM145596NIH HHS S10 OD016212NINDS NIH HHS R01 NS095411NINDS NIH HHS R21 NS060940U.S. National Science Foundation
6 · The paper itself

Abstract

Neurofibromatosis type 1, a genetic disorder caused by pathogenic germline variations in NF1, predisposes individuals to the development of tumors, including cutaneous and plexiform neurofibromas (CNs and PNs), optic gliomas, astrocytomas, juvenile myelomonocytic leukemia, high-grade gliomas and malignant peripheral nerve sheath tumors (MPNSTs), which are chemotherapy- and radiation-resistant sarcomas with poor survival. Loss of NF1 also occurs in sporadic tumors, such as glioblastoma (GBM), melanoma, breast, ovarian and lung cancers. We performed a high-throughput screen for compounds that were synthetic lethal with NF1 loss, which identified several leads, including the small molecule Y102. Treatment of cells with Y102 perturbed autophagy, mitophagy and lysosome positioning in NF1-deficient cells. A dual proteomics approach identified BLOC-one-related complex (BORC), which is required for lysosome positioning and trafficking, as a potential target of Y102. Knockdown of a BORC subunit using siRNA recapitulated the phenotypes observed with Y102 treatment. Our findings demonstrate that BORC might be a promising therapeutic target for NF1-deficient tumors.

Indexed as

LysosomesNeurofibromin 1AutophagyHumansNeurofibromatosis 1Protein TransportSynthetic Lethal MutationsNeurofibromin 1NF1 protein, humanBORCLysosomesMitochondriaNF1RASSynthetic lethal

Identifiers

PMID39016685
PMCPMC11361638

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.