Evidence map›Paper›PMID 39016614›Full record

ArticleApplied and environmental microbiology2024

Viral communities in a pH>10 serpentinite-like environment: insight into diversity and potential roles in modulating the microbiomes by bioactive vitamin B

Yu He, Shiyan Zhuo, Donghao Gao, Yue Pan, Meng Li, Jie Pan, Yongguang Jiang, Yidan Hu, Jinzhi Guo, Qin Lin and 10 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Applied and environmental microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Ecological plasticity ofMicrobiology spectrum · 2026
    Article
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  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Yu HeSchool of Environmental Studies, China University of Geosciences, Wuhan, China.ORCID 0000-0002-5095-8220
Shiyan ZhuoSchool of Environmental Studies, China University of Geosciences, Wuhan, China.
Donghao GaoSchool of Environmental Studies, China University of Geosciences, Wuhan, China.
Yue PanCollege of Land Science and Technology, China Agricultural University, Beijing, China.
Meng LiArchaeal Biology Center, Institute for Advanced Studies, Shenzhen University, Shenzhen, China.ORCID 0000-0001-8675-0758
Jie PanArchaeal Biology Center, Institute for Advanced Studies, Shenzhen University, Shenzhen, China.
Yongguang JiangSchool of Environmental Studies, China University of Geosciences, Wuhan, China.
Yidan HuSchool of Environmental Studies, China University of Geosciences, Wuhan, China.
Jinzhi GuoSchool of Environmental Studies, China University of Geosciences, Wuhan, China.
Qin LinShanghai Biozeron Biological Technology Co. Ltd, China, Shanghai, China.
Robert A SanfordDepartment of Earth Science & Environmental Change, University of Illinois Urbana-Champaign, Urbana, llinois, USA.ORCID 0000-0002-9607-9897
Weimin SunGuangdong Institute of Eco-environmental and Soil Science, Guangdong, China.
Jianying ShangCollege of Land Science and Technology, China Agricultural University, Beijing, China.
Na WeiDepartment of Civil and Environmental Engineering, University of Illinois Urbana-Champaign, Urbana, Illinois, USA.
Shuming PengInstitute of Ecological Environment, Chengdu University of Technology, Chengdu, China.
Zhou JiangSchool of Environmental Studies, China University of Geosciences, Wuhan, China.
Shuyi LiSchool of Environmental Studies, China University of Geosciences, Wuhan, China.
Yongzhe LiSchool of Environmental Studies, China University of Geosciences, Wuhan, China.
Yiran DongSchool of Environmental Studies, China University of Geosciences, Wuhan, China.ORCID 0000-0001-6155-2544
Liang ShiSchool of Environmental Studies, China University of Geosciences, Wuhan, China.ORCID 0000-0003-4546-4741

Funding

Fundamental Research Funds for the Chinese Central Government via China University of Gecsciences (Wuhan) 122-G1323522144National Natural Science Foundation of China (NSFC) 41877321, 92051111National Natural Science Foundation of China (NSFC) 42272353
6 · The paper itself

Abstract

Viral communities exist in a variety of ecosystems and play significant roles in mediating biogeochemical processes, whereas viruses inhabiting strongly alkaline geochemical systems remain underexplored. In this study, the viral diversity, potential functionalities, and virus-host interactions in a strongly alkaline environment (pH = 10.4-12.4) exposed to the leachates derived from the serpentinization-like reactions of smelting slags were investigated. The viral populations (e.g., Herelleviridae, Queuovirinae, and Inoviridae) were closely associated with the dominating prokaryotic hosts (e.g., IMPORTANCE: This study presents a comprehensive investigation into the diversity, potential functionalities, and virus-microbe interactions in an artificially induced strongly alkaline environment. Functional validation of the detected viral

Indexed as

MicrobiotaBacteriaEscherichia coliHydrogen-Ion ConcentrationTetrahydrofolate DehydrogenaseViromeVirusesTetrahydrofolate Dehydrogenaseauxiliary metabolic genescofactorsdihydrofolate reductasetetrahydrofolateultrabasic environmentviral communities

Identifiers

PMID39016614
PMCPMC11337834

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.