Evidence map›Paper›PMID 39014153›Full record

ArticleNature plants2024

Evolutional heterochromatin condensation delineates chromocenter formation and retrotransposon silencing in plants.

Weifeng Zhang, Lingling Cheng, Kuan Li, Leiming Xie, Jinyao Ji, Xue Lei, Anjie Jiang, Chunlai Chen, Haitao Li, Pilong Li and 1 more

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Article in Nature plants, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Weifeng ZhangCenter for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, China.ORCID http://orcid.org/0000-0002-5124-9856
Lingling ChengCenter for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, China.ORCID http://orcid.org/0000-0002-6563-507X
Kuan LiCenter for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, China.
Leiming XieTsinghua-Peking Center for Life Sciences, Beijing, China.
Jinyao JiTsinghua-Peking Center for Life Sciences, Beijing, China.
Xue LeiCenter for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, China.
Anjie JiangCenter for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, China.
Chunlai ChenTsinghua-Peking Center for Life Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-0128-7766
Haitao LiTsinghua-Peking Center for Life Sciences, Beijing, China.
Pilong LiTsinghua-Peking Center for Life Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-1783-3100
Qianwen SunCenter for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, China. sunqianwen@mail.tsinghua.edu.cn.ORCID http://orcid.org/0000-0003-0111-5400

Funding

National Natural Science Foundation of China (National Science Foundation of China) 31822028National Natural Science Foundation of China (National Science Foundation of China) 32070651National Natural Science Foundation of China (National Science Foundation of China) 91940306
6 · The paper itself

Abstract

Heterochromatic condensates (chromocenters) are critical for maintaining the silencing of heterochromatin. It is therefore puzzling that the presence of chromocenters is variable across plant species. Here we reveal that variations in the plant heterochromatin protein ADCP1 confer a diversity in chromocenter formation via phase separation. ADCP1 physically interacts with the high mobility group protein HMGA to form a complex and mediates heterochromatin condensation by multivalent interactions. The loss of intrinsically disordered regions (IDRs) in ADCP1 homologues during evolution has led to the absence of prominent chromocenter formation in various plant species, and introduction of IDR-containing ADCP1 with HMGA promotes heterochromatin condensation and retrotransposon silencing. Moreover, plants in the Cucurbitaceae group have evolved an IDR-containing chimaera of ADCP1 and HMGA, which remarkably enables formation of chromocenters. Together, our work uncovers a coevolved mechanism of phase separation in packing heterochromatin and silencing retrotransposons.

Indexed as

Gene SilencingHeterochromatinRetroelementsEvolution, MolecularPlant ProteinsHeterochromatinPlant ProteinsRetroelements

Identifiers

PMID39014153

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.