Evidence map›Paper›PMID 39013920›Full record

ArticleNature communications2024

Phosphoribosylpyrophosphate synthetase as a metabolic valve advances Methylobacterium/Methylorubrum phyllosphere colonization and plant growth.

Cong Zhang, Di-Fei Zhou, Meng-Ying Wang, Ya-Zhen Song, Chong Zhang, Ming-Ming Zhang, Jing Sun, Lu Yao, Xu-Hua Mo, Zeng-Xin Ma and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Adaptively evolvedApplied and environmental microbiology · 2025
    Article
  11. Transgenic Maize ofMicroorganisms · 2025
    Article
  12. Multi-omics reveals novel forage advantages ofFrontiers in microbiology · 2025
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Cong Zhang *School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, PR China.
Di-Fei Zhou *School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, PR China.
Meng-Ying Wang *School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, PR China.
Ya-Zhen Song *School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, PR China.
Chong ZhangKey Laboratory of Industrial Biocatalysis, Ministry of Education, Department of Chemical Engineering, Tsinghua University, Beijing, PR China.
Ming-Ming ZhangSchool of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, PR China.
Jing SunSchool of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, PR China.
Lu YaoTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, PR China.
Xu-Hua MoSchool of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, PR China.
Zeng-Xin MaSchool of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, PR China.
Xiao-Jie YuanSchool of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, PR China.
Yi ShaoSchool of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, PR China.
Hao-Ran WangSchool of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, PR China.
Si-Han DongSchool of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, PR China.
Kai BaoSchool of Life Sciences, Hubei University, Wuhan, Hubei, PR China.
Shu-Huan LuCABIO Biotech (Wuhan) Co. Ltd., Wuhan, Hubei, PR China.
Martin SadilekDepartment of Chemistry, University of Washington, Seattle, WA, USA.
Marina G KalyuzhnayaDepartment of Biology, San Diego State University, San Diego, CA, USA.ORCID 0000-0002-9058-7794
Xin-Hui XingKey Laboratory of Industrial Biocatalysis, Ministry of Education, Department of Chemical Engineering, Tsinghua University, Beijing, PR China.
Song YangSchool of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, PR China. yangsong1209@163.com.ORCID 0000-0002-4022-3941

Funding

National Natural Science Foundation of China (National Science Foundation of China) 22078169National Natural Science Foundation of China (National Science Foundation of China) 31900004
6 · The paper itself

Abstract

The proficiency of phyllosphere microbiomes in efficiently utilizing plant-provided nutrients is pivotal for their successful colonization of plants. The methylotrophic capabilities of Methylobacterium/Methylorubrum play a crucial role in this process. However, the precise mechanisms facilitating efficient colonization remain elusive. In the present study, we investigate the significance of methanol assimilation in shaping the success of mutualistic relationships between methylotrophs and plants. A set of strains originating from Methylorubrum extorquens AM1 are subjected to evolutionary pressures to thrive under low methanol conditions. A mutation in the phosphoribosylpyrophosphate synthetase gene is identified, which converts it into a metabolic valve. This valve redirects limited C1-carbon resources towards the synthesis of biomass by up-regulating a non-essential phosphoketolase pathway. These newly acquired bacterial traits demonstrate superior colonization capabilities, even at low abundance, leading to increased growth of inoculated plants. This function is prevalent in Methylobacterium/Methylorubrum strains. In summary, our findings offer insights that could guide the selection of Methylobacterium/Methylorubrum strains for advantageous agricultural applications.

Indexed as

MethanolMethylobacteriumAldehyde-LyasesBacterial ProteinsBiomassMethylobacterium extorquensMicrobiotaMutationPlant DevelopmentPlant LeavesSymbiosisAldehyde-LyasesBacterial ProteinsMethanolphosphoketolase

Identifiers

PMID39013920
PMCPMC11252147

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.