Evidence map›Paper›PMID 39013881›Full record

ArticleNature communications2024

Multi-omics analysis of green lineage osmotic stress pathways unveils crucial roles of different cellular compartments.

Josep Vilarrasa-Blasi, Tamara Vellosillo, Robert E Jinkerson, Friedrich Fauser, Tingting Xiang, Benjamin B Minkoff, Lianyong Wang, Kiril Kniazev, Michael Guzman, Jacqueline Osaki and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Time-Course Transcriptomic Analysis IdentifiesPlants (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Algal origins of core land plant stress response subnetworks.The Plant journal : for cell and molecular biology · 2025
    Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Josep Vilarrasa-BlasiDepartment of Biology, Stanford University, Stanford, CA, 94305, USA. pituvilarnadal@gmail.com.ORCID 0000-0003-4328-4798
Tamara VellosilloDepartment of Biology, Stanford University, Stanford, CA, 94305, USA.
Robert E JinkersonCarnegie Institution for Science, Department of Plant Biology, Stanford, CA, 94305, USA.ORCID 0000-0001-9399-1613
Friedrich FauserCarnegie Institution for Science, Department of Plant Biology, Stanford, CA, 94305, USA.
Tingting XiangCarnegie Institution for Science, Department of Plant Biology, Stanford, CA, 94305, USA.
Benjamin B MinkoffDepartment of Biochemistry and Center for Genomics Science Innovation, University of Wisconsin, Madison, WI, 53706, USA.
Lianyong WangDepartment of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA.
Kiril KniazevDepartment of Biology, Stanford University, Stanford, CA, 94305, USA.
Michael GuzmanCarnegie Institution for Science, Department of Plant Biology, Stanford, CA, 94305, USA.
Jacqueline OsakiCarnegie Institution for Science, Department of Plant Biology, Stanford, CA, 94305, USA.
Gregory A Barrett-WiltBiotechnology Center, University of Wisconsin, Madison, WI, 53706, USA.
Michael R SussmanDepartment of Biochemistry and Center for Genomics Science Innovation, University of Wisconsin, Madison, WI, 53706, USA.ORCID 0000-0001-9374-3353
Martin C JonikasCarnegie Institution for Science, Department of Plant Biology, Stanford, CA, 94305, USA.ORCID 0000-0002-9519-6055
José R DinnenyDepartment of Biology, Stanford University, Stanford, CA, 94305, USA. dinneny@stanford.edu.ORCID 0000-0002-3998-724X

Funding

Transforming our understanding of eukaryotic gene functions through chemical genetics in the green alga Chlamydomonas reinhardtiiDP2GM119137 · NIGMS · PRINCETON UNIVERSITY · PI JONIKAS, MARTIN CASIMIR · 2015 to 2015
$2.4M
Signaling in cell expansion and morphogenesisR01GM123259 · NIGMS · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI DINNENY, JOSE R, EHRHARDT, DAVID W · 2017 to 2020
$1.9M
NIGMS NIH HHS DP2 GM119137NIGMS NIH HHS R01 GM123259
6 · The paper itself

Abstract

Maintenance of water homeostasis is a fundamental cellular process required by all living organisms. Here, we use the single-celled green alga Chlamydomonas reinhardtii to establish a foundational understanding of osmotic-stress signaling pathways through transcriptomics, phosphoproteomics, and functional genomics approaches. Comparison of pathways identified through these analyses with yeast and Arabidopsis allows us to infer their evolutionary conservation and divergence across these lineages. 76 genes, acting across diverse cellular compartments, were found to be important for osmotic-stress tolerance in Chlamydomonas through their functions in cytoskeletal organization, potassium transport, vesicle trafficking, mitogen-activated protein kinase and chloroplast signaling. We show that homologs for five of these genes have conserved functions in stress tolerance in Arabidopsis and reveal a novel PROFILIN-dependent stage of acclimation affecting the actin cytoskeleton that ensures tissue integrity upon osmotic stress. This study highlights the conservation of the stress response in algae and land plants, and establishes Chlamydomonas as a unicellular plant model system to dissect the osmotic stress signaling pathway.

Indexed as

ArabidopsisChlamydomonas reinhardtiiOsmotic PressureSignal TransductionCell CompartmentationChloroplastsGene Expression Regulation, PlantGenomicsMultiomicsPlant ProteinsProteomicsStress, PhysiologicalTranscriptomePlant Proteins

Identifiers

PMID39013881
PMCPMC11252407

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.