Evidence map›Paper›PMID 39013635›Full record

ArticleGigaScience2024

Unveiling vertebrate development dynamics in frog Xenopus laevis using micro-CT imaging.

Jakub Laznovsky, Michaela Kavkova, Alice Helena Reis, Pavla Robovska-Havelkova, Lorena Agostini Maia, Jan Krivanek, Tomas Zikmund, Jozef Kaiser, Marcela Buchtova, Jakub Harnos

Abstract read
In one paragraph

Article in GigaScience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jakub LaznovskyCentral European Institute of Technology, Brno University of Technology, 612 00 Brno, Czech Republic.ORCID 0000-0002-1323-5269
Michaela KavkovaCentral European Institute of Technology, Brno University of Technology, 612 00 Brno, Czech Republic.ORCID 0000-0001-7435-9292
Alice Helena ReisDepartment of Chemical Engineering, Columbia University, New York, NY 10025, USA, and Department of Genetics and Development, Columbia Stem Cell Initiative, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0002-7431-5502
Pavla Robovska-HavelkovaDepartment of Zoology, Faculty of Science, University of South Bohemia, 370 05 Ceske Budejovice, Czech Republic.ORCID 0000-0002-5734-9890
Lorena Agostini MaiaDepartment of Experimental Biology, Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic.ORCID 0009-0008-7730-9002
Jan KrivanekDepartment of Histology and Embryology, Faculty of Medicine, Masaryk University, 625 00 Brno, Czech Republic.ORCID 0000-0002-7590-187X
Tomas ZikmundCentral European Institute of Technology, Brno University of Technology, 612 00 Brno, Czech Republic.ORCID 0000-0003-2948-5198
Jozef KaiserCentral European Institute of Technology, Brno University of Technology, 612 00 Brno, Czech Republic.ORCID 0000-0002-7397-125X
Marcela BuchtovaDepartment of Experimental Biology, Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic.ORCID 0000-0002-0262-6774
Jakub HarnosDepartment of Experimental Biology, Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic.ORCID 0000-0002-0752-9260

Funding

Brno University of Technology FSI-S-23-8389Czech Science Foundation GA22-02794SMasaryk University MUNI/J/0004/2021The Ministry of Education, Youth and Sports LM2023051
6 · The paper itself

Abstract

backgroundXenopus laevis, the African clawed frog, is a versatile vertebrate model organism in various biological disciplines, prominently in developmental biology to study body plan reorganization during metamorphosis. However, a notable gap exists in the availability of comprehensive datasets encompassing Xenopus' late developmental stages.

findingsThis study utilized micro-computed tomography (micro-CT), a noninvasive 3-dimensional (3D) imaging technique with micrometer-scale resolution, to explore the developmental dynamics and morphological changes in Xenopus laevis. Our approach involved generating high-resolution images and computed 3D models of developing Xenopus specimens, spanning from premetamorphosis tadpoles to fully mature adults. This dataset enhances our understanding of vertebrate development and supports various analyses. We conducted a careful examination, analyzing body size, shape, and morphological features, focusing on skeletogenesis, teeth, and organs like the brain and gut at different stages. Our analysis yielded valuable insights into 3D morphological changes during Xenopus' development, documenting details previously unrecorded. These datasets hold the solid potential for further morphological and morphometric analyses, including segmentation of hard and soft tissues.

conclusionsOur repository of micro-CT scans represents a significant resource that can enhance our understanding of Xenopus' development and the associated morphological changes in the future. The widespread utility of this amphibian species, coupled with the exceptional quality of our scans, which encompass a comprehensive series of developmental stages, opens up extensive opportunities for their broader research application. Moreover, these scans can be used in virtual reality, 3D printing, and educational contexts, further expanding their value and impact.

Indexed as

Imaging, Three-DimensionalXenopus laevisX-Ray MicrotomographyAnimalsLarvaMetamorphosis, Biologicaldevelopmentmicro–computed tomographymorphological changesvertebratesXenopus laevis

Identifiers

PMID39013635
PMCPMC12558079

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.